MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-3072

Family name MIR-3072 (all species)
Seed GCCCCCU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-3072
Paralogues
Orthologues Mmu-Mir-3072 
Node of Origin (locus) Muridae
Node of Origin (family) Muridae
Genome context
(rn6)
chr6: 133898823-133898879 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-3072)
Mir-154-P1 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133858858-133858915 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P3-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P3-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P4 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P6a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P6a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P7 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P8-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P9 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P10 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P11 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P12 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P2 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P4 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P5 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P15 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P17 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P18 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P19 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P24 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P25 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P26 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P28-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P28-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P29 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P30 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P31 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P32 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P33 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCAAGAAGGUGGCAGGGCUGUGAGUGUGAGGGACCCCGAGGGAGGGCAGGCUGCCCCAGGCCCUGCCCCCUCCAGGAAGCCUUCUUGCUCCAGCCCCACACACGAUCUCAAUCUC
Get precursor sequence
Structure
        10           20        30        40        50        
CCCCAAGAAGGUGGCAG---|    U     U     ACC  GA   A       CUGCC 
                    GGCUG GAGUG GAGGG   CC  GGG GGGCAGG     \
                    CCGAC CUCGU CUUCC   GG  CUC CCCGUCC     C
CUCUAACUCUAGCACACACC^    -     U     GAA  AC   C       CGGAC 
     110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
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Star sequence

Rno-Mir-3072_5p*

mirBase accessionNone
Sequence
0- AGGGACCCCGAGGGAGGGCAGG -22
Get sequence
Mature sequence

Rno-Mir-3072_3p

mirBase accessionMIMAT0025071
Sequence
35- UGCCCCCUCCAGGAAGCCUUCU -57
Get sequence
Proposed targets TargetScanVert: rno-miR-3072
miRDB: MIMAT0025071