MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-154-P30

Family name MIR-154 (all species)
Seed AAUGUUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-409a
Paralogues Rno-Mir-154-P1  Rno-Mir-154-P2-v1  Rno-Mir-154-P2-v2  Rno-Mir-154-P3-v1  Rno-Mir-154-P3-v2  Rno-Mir-154-P4  Rno-Mir-154-P6a-v1  Rno-Mir-154-P6a-v2  Rno-Mir-154-P7  Rno-Mir-154-P8-o1  Rno-Mir-154-P9  Rno-Mir-154-P10  Rno-Mir-154-P11  Rno-Mir-154-P12  Rno-Mir-154-P15  Rno-Mir-154-P17  Rno-Mir-154-P18  Rno-Mir-154-P19  Rno-Mir-154-P24  Rno-Mir-154-P25  Rno-Mir-154-P26  Rno-Mir-154-P28-v1  Rno-Mir-154-P28-v2  Rno-Mir-154-P29  Rno-Mir-154-P31  Rno-Mir-154-P32  Rno-Mir-154-P33 
Orthologues Bta-Mir-154-P30  Cfa-Mir-154-P30  Cja-Mir-154-P30  Cpo-Mir-154-P30  Dno-Mir-154-P30  Eca-Mir-154-P30  Ete-Mir-154-P30  Hsa-Mir-154-P30  Laf-Mir-154-P30  Mml-Mir-154-P30  Mmr-Mir-154-P30  Mmu-Mir-154-P30  Ocu-Mir-154-P30  Pab-Mir-154-P30 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr6: 133893432-133893485 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P30)
Mir-154-P1 chr6: 133857715-133857772 [+] UCSC Ensembl
Mir-154-P2-v2 chr6: 133858858-133858915 [+] UCSC Ensembl
Mir-154-P2-v1 chr6: 133858859-133858914 [+] UCSC Ensembl
Mir-154-P3-v1 chr6: 133859329-133859383 [+] UCSC Ensembl
Mir-154-P3-v2 chr6: 133859330-133859382 [+] UCSC Ensembl
Mir-154-P4 chr6: 133860500-133860556 [+] UCSC Ensembl
Mir-154-P6a-v1 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P6a-v2 chr6: 133861214-133861269 [+] UCSC Ensembl
Mir-154-P7 chr6: 133861509-133861566 [+] UCSC Ensembl
Mir-154-P8-o1 chr6: 133862190-133862249 [+] UCSC Ensembl
Mir-154-P9 chr6: 133864385-133864440 [+] UCSC Ensembl
Mir-154-P10 chr6: 133864729-133864785 [+] UCSC Ensembl
Mir-666 chr6: 133866541-133866601 [+] UCSC Ensembl
Mir-154-P11 chr6: 133866672-133866729 [+] UCSC Ensembl
Mir-154-P12 chr6: 133868298-133868357 [+] UCSC Ensembl
Mir-667 chr6: 133869584-133869647 [+] UCSC Ensembl
Mir-376-P2 chr6: 133872453-133872510 [+] UCSC Ensembl
Mir-376-P4 chr6: 133873110-133873167 [+] UCSC Ensembl
Mir-376-P5 chr6: 133873618-133873675 [+] UCSC Ensembl
Mir-154-P15 chr6: 133874161-133874223 [+] UCSC Ensembl
Mir-154-P17 chr6: 133876615-133876677 [+] UCSC Ensembl
Mir-154-P18 chr6: 133877137-133877194 [+] UCSC Ensembl
Mir-154-P19 chr6: 133877840-133877901 [+] UCSC Ensembl
Mir-544 chr6: 133879179-133879235 [+] UCSC Ensembl
Mir-154-P24 chr6: 133884190-133884247 [+] UCSC Ensembl
Mir-134 chr6: 133884554-133884614 [+] UCSC Ensembl
Mir-154-P25 chr6: 133885310-133885368 [+] UCSC Ensembl
Mir-154-P26 chr6: 133888600-133888657 [+] UCSC Ensembl
Mir-154-P28-v2 chr6: 133889296-133889351 [+] UCSC Ensembl
Mir-154-P28-v1 chr6: 133889297-133889350 [+] UCSC Ensembl
Mir-154-P29 chr6: 133890697-133890756 [+] UCSC Ensembl
Mir-541 chr6: 133892668-133892733 [+] UCSC Ensembl
Mir-154-P30 chr6: 133893432-133893485 [+] UCSC Ensembl
Mir-154-P31 chr6: 133893579-133893634 [+] UCSC Ensembl
Mir-154-P32 chr6: 133893706-133893761 [+] UCSC Ensembl
Mir-154-P33 chr6: 133894007-133894062 [+] UCSC Ensembl
Mir-3072 chr6: 133898823-133898879 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCCAAGCCUCUCCAUGGUACUCGGAGAGAGGUUACCCGAGCAACUUUGCAUCUGGAGGACGAAUGUUGCUCGGUGAACCCCUUUUCGGUAUCAAAUCCCUCCAGGGAGGCCA
Get precursor sequence
Structure
        10           20        30        40         50      
CGUCCAAGCCUCUCCAU---|    U       A    AC         -    CAUCU 
                    GGUAC CGGAGAG GGUU  CCGAGCAAC UUUG     \
                    CUAUG GCUUUUC CCAA  GGCUCGUUG AAGC     G
ACCGGAGGGACCUCCCUAAA^    -       C    GU         U    AGGAG 
  110       100        90         80        70        60
Deep sequencing
Go to detailed chart
CommentThis gene was classified as a non-canonical miRNA in Fromm et al. (2015) given that the Dicer cut is consistently +4. However, the Drosha cut is +2 and reads are abrogated with the Drosha knock-out and hence it is accepted here.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Rno-Mir-154-P30_5p*

mirBase accessionMIMAT0003204
Sequence
0- AGGUUACCCGAGCAACUUUGCAU -23
Get sequence
Proposed targets microrna.org: MIMAT0003204
TargetScanVert: rno-miR-409a-5p
miRDB: MIMAT0003204
Mature sequence

Rno-Mir-154-P30_3p

mirBase accessionMIMAT0003205
Sequence
32- GAAUGUUGCUCGGUGAACCCCU -54
Get sequence
Proposed targets microrna.org: MIMAT0003205
TargetScanVert: rno-miR-409a-3p
miRDB: MIMAT0003205