MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-154-P30

Family name MIR-154 (all species)
Seed AAUGUUG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-154-P1  Laf-Mir-154-P2  Laf-Mir-154-P3  Laf-Mir-154-P4  Laf-Mir-154-P5  Laf-Mir-154-P6a  Laf-Mir-154-P6b  Laf-Mir-154-P6c  Laf-Mir-154-P7  Laf-Mir-154-P8  Laf-Mir-154-P9  Laf-Mir-154-P10  Laf-Mir-154-P11  Laf-Mir-154-P12  Laf-Mir-154-P15  Laf-Mir-154-P16  Laf-Mir-154-P17  Laf-Mir-154-P18  Laf-Mir-154-P19  Laf-Mir-154-P20  Laf-Mir-154-P21  Laf-Mir-154-P22  Laf-Mir-154-P23  Laf-Mir-154-P24  Laf-Mir-154-P25  Laf-Mir-154-P26  Laf-Mir-154-P27  Laf-Mir-154-P28  Laf-Mir-154-P29  Laf-Mir-154-P31  Laf-Mir-154-P32  Laf-Mir-154-P33  Laf-Mir-154-P34 
Orthologues Bta-Mir-154-P30  Cfa-Mir-154-P30  Cja-Mir-154-P30  Cpo-Mir-154-P30  Dno-Mir-154-P30  Eca-Mir-154-P30  Ete-Mir-154-P30  Hsa-Mir-154-P30  Mml-Mir-154-P30  Mmr-Mir-154-P30  Mmu-Mir-154-P30  Ocu-Mir-154-P30  Pab-Mir-154-P30  Rno-Mir-154-P30 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010036.1: 75517046-75517099 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCCAAGCCUCUCUGUGGUACUCGGGGAGAGGUUACCCGAGCAACUUUGCAUCUGGACGACGAAUGUUGCUCGGUGAACCCCUUCUCGGUAUCAAAUUCCACCAGGGAGGCCG
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Structure
        10           20        30        40         50      
CGUCCAAGCCUCUCUGU---|    U       A    AC         -    CAUCU 
                    GGUAC CGGGGAG GGUU  CCGAGCAAC UUUG     \
                    CUAUG GCUCUUC CCAA  GGCUCGUUG AAGC     G
GCCGGAGGGACCACCUUAAA^    -       C    GU         U    AGCAG 
  110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-154-P30_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUACCCGAGCAACUUUGCAU -23
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Mature sequence

Laf-Mir-154-P30_3p
mirBase accessionNone
Sequence 
32- GAAUGUUGCUCGGUGAACCCCU -54
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