MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-154-P8

Family name MIR-154 (all species)
Seed ACACACC
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues Laf-Mir-154-P1  Laf-Mir-154-P2  Laf-Mir-154-P3  Laf-Mir-154-P4  Laf-Mir-154-P5  Laf-Mir-154-P6a  Laf-Mir-154-P6b  Laf-Mir-154-P6c  Laf-Mir-154-P7  Laf-Mir-154-P9  Laf-Mir-154-P10  Laf-Mir-154-P11  Laf-Mir-154-P12  Laf-Mir-154-P15  Laf-Mir-154-P16  Laf-Mir-154-P17  Laf-Mir-154-P18  Laf-Mir-154-P19  Laf-Mir-154-P20  Laf-Mir-154-P21  Laf-Mir-154-P22  Laf-Mir-154-P23  Laf-Mir-154-P24  Laf-Mir-154-P25  Laf-Mir-154-P26  Laf-Mir-154-P27  Laf-Mir-154-P28  Laf-Mir-154-P29  Laf-Mir-154-P30  Laf-Mir-154-P31  Laf-Mir-154-P32  Laf-Mir-154-P33  Laf-Mir-154-P34 
Orthologues Bta-Mir-154-P8a  Bta-Mir-154-P8b  Cfa-Mir-154-P8a  Cfa-Mir-154-P8b  Cja-Mir-154-P8a  Cpo-Mir-154-P8-o1  Dno-Mir-154-P8a  Dno-Mir-154-P8b  Eca-Mir-154-P8a  Eca-Mir-154-P8b  Ete-Mir-154-P8a  Ete-Mir-154-P8b  Hsa-Mir-154-P8a  Hsa-Mir-154-P8b  Mml-Mir-154-P8a  Mml-Mir-154-P8b  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmu-Mir-154-P8-o1  Ocu-Mir-154-P8-o1  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Rno-Mir-154-P8-o1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010036.1: 75557501-75557560 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGUCAGUGUUAAUCUGUAGUACCCGAAGAGAGGUUUCCUGGGUUUCGGUUUCUUUUUUGAUGAUGAAACACACCUGGUUAACCUCUUUUCCAGUAUCAGAUCCCACCUUGGGAGGCCU
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Structure
        10        20          30        40        50        60
CUUGUCAGUGUUAAUCUGUA--|   CC           UC UG   UUCG     UUUUU 
                      GUAC  GAAGAGAGGUU  C  GGU    GUUUC     U
                      UAUG  CUUUUCUCCAA  G  CCA    CAAAG     G
UCCGGAGGGUUCCACCCUAGAC^   AC           UU GU   CA--     UAGUA 
.       110       100        90        80          70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Star sequence

Laf-Mir-154-P8_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGAGGUUUCCUGGGUUUCGGUUUC -24
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Mature sequence

Laf-Mir-154-P8_3p (predicted)
mirBase accessionNone
Sequence 
38- AACACACCUGGUUAACCUCUUU -60
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