| MirGeneDB ID | Laf-Mir-154-P20 |
|---|---|
| Family name | MIR-154 (all species) |
| Seed | UAAUAUC |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | Laf-Mir-154-P1 Laf-Mir-154-P2 Laf-Mir-154-P3 Laf-Mir-154-P4 Laf-Mir-154-P5 Laf-Mir-154-P6a Laf-Mir-154-P6b Laf-Mir-154-P6c Laf-Mir-154-P7 Laf-Mir-154-P8 Laf-Mir-154-P9 Laf-Mir-154-P10 Laf-Mir-154-P11 Laf-Mir-154-P12 Laf-Mir-154-P15 Laf-Mir-154-P16 Laf-Mir-154-P17 Laf-Mir-154-P18 Laf-Mir-154-P19 Laf-Mir-154-P21 Laf-Mir-154-P22 Laf-Mir-154-P23 Laf-Mir-154-P24 Laf-Mir-154-P25 Laf-Mir-154-P26 Laf-Mir-154-P27 Laf-Mir-154-P28 Laf-Mir-154-P29 Laf-Mir-154-P30 Laf-Mir-154-P31 Laf-Mir-154-P32 Laf-Mir-154-P33 Laf-Mir-154-P34 |
| Orthologues | Cfa-Mir-154-P20 Cja-Mir-154-P20 Cpo-Mir-154-P20 Dno-Mir-154-P20 Eca-Mir-154-P20 Ete-Mir-154-P20 Hsa-Mir-154-P20 Mml-Mir-154-P20 Mmr-Mir-154-P20 Ocu-Mir-154-P20 Pab-Mir-154-P20 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010036.1: 75536489-75536547 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CCUGAUGGUGCGAUUCUUUGGUGCUUAAAGAAUGGCUGUCCGUACUAUGGUCUCUAUAUUUAUGAUGAUUAAUAUCGGACAACCAUUGUUUUAGUAUCCAAAUUGGCUUCAGUUUCUCAGet precursor sequence |
| Structure | 10 20 30 40 50 CCUGAUGGUGCGAUUCU- -| U G C UACUA UCUAUA UUGG UGCU AAA AAUGG UGUCCG UGGUC U AACC AUGA UUU UUACC ACAGGC AUUAG U ACUCUUUGACUUCGGUUA U^ U G A UAUA- UAGUAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-154-P20_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAUGGCUGUCCGUACUAUGGUCU -23
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|
| Mature sequence | Laf-Mir-154-P20_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- UUAAUAUCGGACAACCAUUGU -59
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|
