| MirGeneDB ID | Pab-Mir-541 |
|---|---|
| Family name | MIR-541 (all species) |
| Seed | GGUGGGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-541 Cja-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Laf-Mir-541 Mml-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Rno-Mir-541 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 105496524-105496589 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGGCUCUCUGAGCUCGUGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUUACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCAUCCAUCGUCUGGCCCGAUGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGGCUCUCUGAGCUCGU--| ACGU AAA C G UC CCAAAGUU GCCA CAGGG GGAUUCUG UGUC G CCACU \ CGGU GUCUC CCUAAGAC ACGG U GGUGG U UAGCCCGGUCUGCUACCUA^ GUUC AGG - G -- GUAAGACA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
| Star sequence | Pab-Mir-541_5p* |
| mirBase accession | None |
| Sequence |
0- AAAGGAUUCUGCUGUCGGUCCCACU -25
Get sequence
|
| Mature sequence | Pab-Mir-541_3p |
| mirBase accession | None |
| Sequence |
44- UGGUGGGCACAGAAUCCGGACU -66
Get sequence
|
