MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-541

Family name MIR-541 (all species)
Seed GGUGGGC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-541  Cja-Mir-541  Cpo-Mir-541  Dno-Mir-541  Eca-Mir-541  Ete-Mir-541  Hsa-Mir-541  Laf-Mir-541  Mml-Mir-541  Mmr-Mir-541  Mmu-Mir-541  Ocu-Mir-541  Rno-Mir-541 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105496524-105496589 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCUCUCUGAGCUCGUGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUUUACAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCAUCCAUCGUCUGGCCCGAU
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Structure
        10          20        30        40        50        60    
GGGCUCUCUGAGCUCGU--|   ACGU     AAA        C    G UC     CCAAAGUU 
                   GCCA    CAGGG   GGAUUCUG UGUC G  CCACU        \
                   CGGU    GUCUC   CCUAAGAC ACGG U  GGUGG        U
UAGCCCGGUCUGCUACCUA^   GUUC     AGG        -    G --     GUAAGACA 
    120       110       100        90         80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Li Li
Star sequence

Pab-Mir-541_5p*
mirBase accessionNone
Sequence 
0- AAAGGAUUCUGCUGUCGGUCCCACU -25
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Mature sequence

Pab-Mir-541_3p
mirBase accessionNone
Sequence 
44- UGGUGGGCACAGAAUCCGGACU -66
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