Mir-541

MirGeneDB ID

Mml-Mir-541

Family name

MIR-541 (all species)

Seed

AAGGAUU

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-541

Paralogues

Orthologues

Bta-Mir-541 Cja-Mir-541 Cpo-Mir-541 Dno-Mir-541 Eca-Mir-541 Ete-Mir-541 Hsa-Mir-541 Laf-Mir-541 Mmr-Mir-541 Mmu-Mir-541 Ocu-Mir-541 Pab-Mir-541 Rno-Mir-541

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014342.1: 163284614-163284679 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-541)

Mir-154-P1 CM014342.1: 163243569-163243627 [+] UCSC Ensembl
Mir-154-P2-v2 CM014342.1: 163244837-163244894 [+] UCSC Ensembl
Mir-154-P2-v1 CM014342.1: 163244838-163244893 [+] UCSC Ensembl
Mir-154-P3-v1 CM014342.1: 163245294-163245348 [+] UCSC Ensembl
Mir-154-P3-v2 CM014342.1: 163245295-163245347 [+] UCSC Ensembl
Mir-154-P4 CM014342.1: 163246515-163246571 [+] UCSC Ensembl
Mir-154-P6a-v2 CM014342.1: 163247243-163247298 [+] UCSC Ensembl
Mir-154-P6a-v1 CM014342.1: 163247243-163247298 [+] UCSC Ensembl
Mir-154-P7 CM014342.1: 163247536-163247593 [+] UCSC Ensembl
Mir-154-P8a CM014342.1: 163248299-163248356 [+] UCSC Ensembl
Mir-154-P8b CM014342.1: 163248615-163248673 [+] UCSC Ensembl
Mir-154-P9 CM014342.1: 163250281-163250336 [+] UCSC Ensembl
Mir-154-P11 CM014342.1: 163252625-163252682 [+] UCSC Ensembl
Mir-154-P12 CM014342.1: 163254476-163254533 [+] UCSC Ensembl
Mir-376-P2 CM014342.1: 163259895-163259952 [+] UCSC Ensembl
Mir-376-P3 CM014342.1: 163260280-163260337 [+] UCSC Ensembl
Mir-154-P14 CM014342.1: 163260433-163260488 [+] UCSC Ensembl
Mir-376-P4 CM014342.1: 163260659-163260716 [+] UCSC Ensembl
Mir-376-P5 CM014342.1: 163260987-163261044 [+] UCSC Ensembl
Mir-154-P16a CM014342.1: 163263188-163263247 [+] UCSC Ensembl
Mir-154-P16b CM014342.1: 163264408-163264467 [+] UCSC Ensembl
Mir-154-P17 CM014342.1: 163266126-163266188 [+] UCSC Ensembl
Mir-154-P18 CM014342.1: 163266668-163266725 [+] UCSC Ensembl
Mir-154-P19 CM014342.1: 163267518-163267581 [+] UCSC Ensembl
Mir-154-P20 CM014342.1: 163268097-163268155 [+] UCSC Ensembl
Mir-544 CM014342.1: 163268872-163268928 [+] UCSC Ensembl
Mir-154-P24 CM014342.1: 163274493-163274550 [+] UCSC Ensembl
Mir-134 CM014342.1: 163274871-163274931 [+] UCSC Ensembl
Mir-154-P25 CM014342.1: 163275605-163275663 [+] UCSC Ensembl
Mir-154-P6b CM014342.1: 163276404-163276460 [+] UCSC Ensembl
Mir-154-P26 CM014342.1: 163279927-163279984 [+] UCSC Ensembl
Mir-154-P28-v2 CM014342.1: 163280786-163280841 [+] UCSC Ensembl
Mir-154-P28-v1 CM014342.1: 163280787-163280840 [+] UCSC Ensembl
Mir-154-P29 CM014342.1: 163282167-163282226 [+] UCSC Ensembl
Mir-541 CM014342.1: 163284614-163284679 [+] UCSC Ensembl
Mir-154-P30 CM014342.1: 163285427-163285480 [+] UCSC Ensembl
Mir-154-P31 CM014342.1: 163285578-163285632 [+] UCSC Ensembl
Mir-154-P32 CM014342.1: 163285718-163285773 [+] UCSC Ensembl
Mir-154-P33 CM014342.1: 163286036-163286092 [+] UCSC Ensembl
Mir-154-P34 CM014342.1: 163286843-163286898 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGCUCUCUGAGCUCAUGCCAACGUCAGGGAAAGGAUUCUGCUGUCGGUCCCACUCCAAAGUGCAUAGAAUGGGUGGUGGGCACAGAAUCCGGACUCUGCUUGUGGCAUCUGUCGUCCAGCCCGAU

Get precursor sequence

Structure

        10          20        30        40        50        60    
GGGCUCUCUGAGCUCAU--|   ACGU     AAA        C    G UC     CCAAAGUG 
                   GCCA    CAGGG   GGAUUCUG UGUC G  CCACU        \
                   CGGU    GUCUC   CCUAAGAC ACGG U  GGUGG        C
UAGCCCGACCUGCUGUCUA^   GUUC     AGG        -    G --     GUAAGAUA 
    120       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-541_5p

mirBase accession

MIMAT0012784

Sequence

0- AAAGGAUUCUGCUGUCGGUCCCACU -25

Get sequence

Proposed targets

TargetScanVert: mml-miR-541-5p

Star sequence

Mml-Mir-541_3p*

mirBase accession

MIMAT0026951

Sequence

44- UGGUGGGCACAGAAUCCGGACU -66

Get sequence

Proposed targets

TargetScanVert: mml-miR-541-3p