MirGeneDB 3.0

MirGeneDB ID

Ocu-Mir-154-P19

Family name MIR-154 (all species)
Seed AUACAAG
Species Rabbit (Oryctolagus cuniculus)
MiRBase ID ocu-mir-539
Paralogues Ocu-Mir-154-P1  Ocu-Mir-154-P2-v1  Ocu-Mir-154-P2-v2  Ocu-Mir-154-P3-v1  Ocu-Mir-154-P3-v2  Ocu-Mir-154-P5  Ocu-Mir-154-P6a-v1  Ocu-Mir-154-P6a-v2  Ocu-Mir-154-P7  Ocu-Mir-154-P8-o1  Ocu-Mir-154-P11  Ocu-Mir-154-P12  Ocu-Mir-154-P14  Ocu-Mir-154-P17  Ocu-Mir-154-P18  Ocu-Mir-154-P20  Ocu-Mir-154-P21  Ocu-Mir-154-P23  Ocu-Mir-154-P24  Ocu-Mir-154-P25  Ocu-Mir-154-P26  Ocu-Mir-154-P28-v1  Ocu-Mir-154-P28-v2  Ocu-Mir-154-P29  Ocu-Mir-154-P30  Ocu-Mir-154-P32  Ocu-Mir-154-P33  Ocu-Mir-154-P34 
Orthologues Bta-Mir-154-P19  Cfa-Mir-154-P19  Cja-Mir-154-P19  Cpo-Mir-154-P19  Dno-Mir-154-P19  Eca-Mir-154-P19-v1  Eca-Mir-154-P19-v2  Ete-Mir-154-P19  Hsa-Mir-154-P19  Laf-Mir-154-P19  Mml-Mir-154-P19  Mmu-Mir-154-P19  Pab-Mir-154-P19  Rno-Mir-154-P19 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(oryCun2_add)
chrUn0352: 137513-137576 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P19)
Mir-154-P1 chrUn0352: 121687-121745 [+] UCSC Ensembl
Mir-154-P2-v2 chrUn0352: 122886-122943 [+] UCSC Ensembl
Mir-154-P2-v1 chrUn0352: 122887-122942 [+] UCSC Ensembl
Mir-154-P3-v1 chrUn0352: 123314-123368 [+] UCSC Ensembl
Mir-154-P3-v2 chrUn0352: 123315-123367 [+] UCSC Ensembl
Mir-154-P5 chrUn0352: 124893-124948 [+] UCSC Ensembl
Mir-154-P6a-v1 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P6a-v2 chrUn0352: 125054-125109 [+] UCSC Ensembl
Mir-154-P7 chrUn0352: 125317-125376 [+] UCSC Ensembl
Mir-154-P8-o1 chrUn0352: 126028-126087 [+] UCSC Ensembl
Mir-154-P12 chrUn0352: 130083-130140 [+] UCSC Ensembl
Mir-376-P2 chrUn0352: 132903-132959 [+] UCSC Ensembl
Mir-376-P3 chrUn0352: 133217-133274 [+] UCSC Ensembl
Mir-154-P14 chrUn0352: 133369-133421 [+] UCSC Ensembl
Mir-376-P4 chrUn0352: 133511-133568 [+] UCSC Ensembl
Mir-376-P5 chrUn0352: 133845-133902 [+] UCSC Ensembl
Mir-154-P17 chrUn0352: 136582-136644 [+] UCSC Ensembl
Mir-154-P18 chrUn0352: 137030-137087 [+] UCSC Ensembl
Mir-154-P19 chrUn0352: 137513-137576 [+] UCSC Ensembl
Mir-154-P20 chrUn0352: 138028-138086 [+] UCSC Ensembl
Mir-154-P21 chrUn0352: 139340-139398 [+] UCSC Ensembl
Mir-154-P23 chrUn0352: 141248-141305 [+] UCSC Ensembl
Mir-154-P24 chrUn0352: 142718-142775 [+] UCSC Ensembl
Mir-134 chrUn0352: 143048-143107 [+] UCSC Ensembl
Mir-154-P25 chrUn0352: 143743-143801 [+] UCSC Ensembl
Mir-154-P26 chrUn0352: 147896-147953 [+] UCSC Ensembl
Mir-154-P28-v2 chrUn0352: 149011-149066 [+] UCSC Ensembl
Mir-154-P28-v1 chrUn0352: 149012-149065 [+] UCSC Ensembl
Mir-154-P29 chrUn0352: 150228-150287 [+] UCSC Ensembl
Mir-541 chrUn0352: 152092-152157 [+] UCSC Ensembl
Mir-154-P32 chrUn0352: 152953-153008 [+] UCSC Ensembl
Mir-154-P33 chrUn0352: 153189-153244 [+] UCSC Ensembl
Mir-154-P34 chrUn0352: 153728-153783 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUGCCCGUGCUGCUGUUUCAUACUUGAGGAGAAAUUAUCCUUGGUGUGUUCGCUUUAUUCGUGAUGAAUCAUACAAGGACAAUUUCUUUUUGAGUAUCAAAUCCUGCCUCGGCGGACUUCC
Get precursor sequence
Structure
        10          20        30        40        50        60  
UUCCUGCCCGUGCUGCU--|   C     UG          A      G    UUCGCUUUAU 
                   GUUU AUACU  AGGAGAAAUU UCCUUG UGUG          \
                   UAAA UAUGA  UUUUCUUUAA AGGAAC AUAC          U
CCUUCAGGCGGCUCCGUCC^   C     GU          C      -    UAAGUAGUGC 
  120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
He Ki Te To Wh
Star sequence

Ocu-Mir-154-P19_5p*

mirBase accessionMIMAT0048521
Sequence
0- GGAGAAAUUAUCCUUGGUGUGUU -23
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Mature sequence

Ocu-Mir-154-P19_3p

mirBase accessionMIMAT0048522
Sequence
42- CAUACAAGGACAAUUUCUUUUU -64
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