Mir-154-P19

MirGeneDB ID

Ete-Mir-154-P19

Family name

MIR-154 (all species)

Seed

AUCCAAG

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-154-P1 Ete-Mir-154-P2-v1 Ete-Mir-154-P2-v2 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Ete-Mir-154-P4 Ete-Mir-154-P5 Ete-Mir-154-P6a-v1 Ete-Mir-154-P6a-v2 Ete-Mir-154-P7 Ete-Mir-154-P8a Ete-Mir-154-P8b Ete-Mir-154-P9 Ete-Mir-154-P10 Ete-Mir-154-P11 Ete-Mir-154-P12 Ete-Mir-154-P16 Ete-Mir-154-P17 Ete-Mir-154-P18 Ete-Mir-154-P20 Ete-Mir-154-P21 Ete-Mir-154-P22 Ete-Mir-154-P23 Ete-Mir-154-P24 Ete-Mir-154-P26 Ete-Mir-154-P27 Ete-Mir-154-P28-v1 Ete-Mir-154-P28-v2 Ete-Mir-154-P29 Ete-Mir-154-P30 Ete-Mir-154-P31 Ete-Mir-154-P32 Ete-Mir-154-P33 Ete-Mir-154-P34

Orthologues

Bta-Mir-154-P19 Cfa-Mir-154-P19 Cja-Mir-154-P19 Cpo-Mir-154-P19 Dno-Mir-154-P19 Eca-Mir-154-P19-v1 Eca-Mir-154-P19-v2 Hsa-Mir-154-P19 Laf-Mir-154-P19 Mml-Mir-154-P19 Mmu-Mir-154-P19 Ocu-Mir-154-P19 Pab-Mir-154-P19 Rno-Mir-154-P19

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(echTel2)

JH980297: 82294247-82294309 [-] UCSC

Precursor
(pre-Mir +30nt flank)

UCUCCAGCCGGGUCGCUGUUUCCUACUUGAGGAGAAAUUACCCUUGGUGUGUUGGCUUUAUCACGACAAAUCAUCCAAGGACAAUUUCUUGUUGAGUAUCAAAUCCUGCCUCAGCGAUUUGUA

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Structure

        10          20        30        40        50        60 
UCUCCAGCCGGGUCGCU--|   CC    UG G        AC      U   UUGGCUUUA 
                   GUUU  UACU  A GAGAAAUU  CCUUGG GUG         U
                   UAAA  AUGA  U UUCUUUAA  GGAACC UAC         C
AUGUUUAGCGACUCCGUCC^   CU    GU G        CA      -   UAAACAGCA 
 120       110       100        90        80         70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ete-Mir-154-P19_5p*

mirBase accession

None

Sequence

0- GGAGAAAUUACCCUUGGUGUGUU -23

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Mature sequence

Ete-Mir-154-P19_3p

mirBase accession

None

Sequence

41- CAUCCAAGGACAAUUUCUUGUU -63

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