Mir-154-P2-v2

MirGeneDB ID

Ete-Mir-154-P2-v2

Family name

MIR-154 (all species)

Seed

UAGUAGA

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-154-P1 Ete-Mir-154-P2-v1 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Ete-Mir-154-P4 Ete-Mir-154-P5 Ete-Mir-154-P6a-v1 Ete-Mir-154-P6a-v2 Ete-Mir-154-P7 Ete-Mir-154-P8a Ete-Mir-154-P8b Ete-Mir-154-P9 Ete-Mir-154-P10 Ete-Mir-154-P11 Ete-Mir-154-P12 Ete-Mir-154-P16 Ete-Mir-154-P17 Ete-Mir-154-P18 Ete-Mir-154-P19 Ete-Mir-154-P20 Ete-Mir-154-P21 Ete-Mir-154-P22 Ete-Mir-154-P23 Ete-Mir-154-P24 Ete-Mir-154-P26 Ete-Mir-154-P27 Ete-Mir-154-P28-v1 Ete-Mir-154-P28-v2 Ete-Mir-154-P29 Ete-Mir-154-P30 Ete-Mir-154-P31 Ete-Mir-154-P32 Ete-Mir-154-P33 Ete-Mir-154-P34

Orthologues

Bta-Mir-154-P2-v1 Bta-Mir-154-P2-v2 Cfa-Mir-154-P2-v1 Cfa-Mir-154-P2-v2 Cja-Mir-154-P2 Cpo-Mir-154-P2-v1 Cpo-Mir-154-P2-v2 Dno-Mir-154-P2-v1 Dno-Mir-154-P2-v2 Eca-Mir-154-P2-v1 Eca-Mir-154-P2-v2 Hsa-Mir-154-P2-v1 Hsa-Mir-154-P2-v2 Laf-Mir-154-P2 Mml-Mir-154-P2-v1 Mml-Mir-154-P2-v2 Mmr-Mir-154-P2-v1 Mmr-Mir-154-P2-v2 Mmu-Mir-154-P2-v1 Mmu-Mir-154-P2-v2 Ocu-Mir-154-P2-v1 Ocu-Mir-154-P2-v2 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Rno-Mir-154-P2-v1 Rno-Mir-154-P2-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(echTel2)

JH980297: 82314106-82314163 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CCUCGACGGCCUUGUGUGGUACUUCGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUCAAAUCCAUCCCCGAGGCUCCU

Get precursor sequence

Structure

        10            20        30        40        50        
CCUCGACGGCCUUGUGU----|     UC   AGA    A      AUA       CUUUA 
                     GGUACU  GAG   UAGU GACCGU   GCGUACG     U
                     CUAUGA  CUC   AUCA CUGGCA   UGUAUGC     C
UCCUCGGAGCCCCUACCUAAA^     --   CCA    C      CAA       AGUGU 
      110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ete-Mir-154-P2-v2_5p

mirBase accession

None

Sequence

0- AUAGUAGACCGUAUAGCGUACG -22

Get sequence

Star sequence

Ete-Mir-154-P2-v2_3p*

mirBase accession

None

Sequence

36- UAUGUAACACGGUCCACUAACC -58

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