MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P2-v1

Family name MIR-154 (all species)
Seed AGUAGAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P2-v1  Bta-Mir-154-P2-v2  Cfa-Mir-154-P2-v1  Cfa-Mir-154-P2-v2  Cja-Mir-154-P2  Cpo-Mir-154-P2-v1  Cpo-Mir-154-P2-v2  Dno-Mir-154-P2-v1  Dno-Mir-154-P2-v2  Eca-Mir-154-P2-v1  Eca-Mir-154-P2-v2  Ete-Mir-154-P2-v1  Ete-Mir-154-P2-v2  Hsa-Mir-154-P2-v1  Hsa-Mir-154-P2-v2  Laf-Mir-154-P2  Mml-Mir-154-P2-v1  Mml-Mir-154-P2-v2  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmu-Mir-154-P2-v1  Mmu-Mir-154-P2-v2  Ocu-Mir-154-P2-v1  Ocu-Mir-154-P2-v2  Rno-Mir-154-P2-v1  Rno-Mir-154-P2-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105454313-105454368 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGGCGUCUCUGUGUGGUACUUGGAGAGAUAGUAGACCGUAUAGCGUACGCUUUAUCUGUGACGUAUGUAACACGGUCCACUAACCCUCAGUAUCAAAUCCAUCCCCGAGGCUCC
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Structure
        10            20        30        40        50       
CUCGGCGUCUCUGUGUG----|    UG   AGA    A      AUA       CUUUA 
                     GUACU  GAG   UAGU GACCGU   GCGUACG     U
                     UAUGA  CUC   AUCA CUGGCA   UGUAUGC     C
CCUCGGAGCCCCUACCUAAAC^    --   CCA    C      CAA       AGUGU 
    110       100          90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Mature sequence

Pab-Mir-154-P2-v1_5p
mirBase accessionNone
Sequence 
0- UAGUAGACCGUAUAGCGUACG -21
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Star sequence

Pab-Mir-154-P2-v1_3p*
mirBase accessionNone
Sequence 
35- UAUGUAACACGGUCCACUAAC -56
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