MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P28

Family name MIR-154 (all species)
Seed GAGUAUU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P28  Cfa-Mir-154-P28  Cja-Mir-154-P28  Cpo-Mir-154-P28-v1  Cpo-Mir-154-P28-v2  Dno-Mir-154-P28-v1  Dno-Mir-154-P28-v2  Eca-Mir-154-P28  Ete-Mir-154-P28-v1  Ete-Mir-154-P28-v2  Hsa-Mir-154-P28-v1  Hsa-Mir-154-P28-v2  Laf-Mir-154-P28  Mml-Mir-154-P28-v1  Mml-Mir-154-P28-v2  Mmr-Mir-154-P28  Mmu-Mir-154-P28-v1  Mmu-Mir-154-P28-v2  Ocu-Mir-154-P28-v1  Ocu-Mir-154-P28-v2  Rno-Mir-154-P28-v1  Rno-Mir-154-P28-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105492622-105492675 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAGCACCCAAGUCAGGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUUGGUACUCAAUUCUUCUUGGGAAACG
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Structure
        10           20        30        40        50      
GCGAGCACCCAAGUCAG---|   U    U        U     GU         UUA 
                    GUAC CGAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUG GUUU CCUCUAAC GGUAC  UAUGAGUAG   U
GCAAAGGGUUCUUCUUAACU^   -    U        C     AU         UAU 
  110       100         90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Pab-Mir-154-P28_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUUGUCCAUGGUGUGUUCAUU -22
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Mature sequence

Pab-Mir-154-P28_3p
mirBase accessionNone
Sequence 
32- UGAGUAUUACAUGGCCAAUCUC -54
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