MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P28

Family name MIR-154 (all species)
Seed GAGUAUU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P28  Cfa-Mir-154-P28  Cpo-Mir-154-P28-v1  Cpo-Mir-154-P28-v2  Dno-Mir-154-P28-v1  Dno-Mir-154-P28-v2  Eca-Mir-154-P28  Ete-Mir-154-P28-v1  Ete-Mir-154-P28-v2  Hsa-Mir-154-P28-v1  Hsa-Mir-154-P28-v2  Laf-Mir-154-P28  Mml-Mir-154-P28-v1  Mml-Mir-154-P28-v2  Mmr-Mir-154-P28  Mmu-Mir-154-P28-v1  Mmu-Mir-154-P28-v2  Ocu-Mir-154-P28-v1  Ocu-Mir-154-P28-v2  Pab-Mir-154-P28  Rno-Mir-154-P28-v1  Rno-Mir-154-P28-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131875373-131875426 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAGCGCCCAAGUCAGGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCGGUACUAAAUUCUUCUUGGGAAACG
Get precursor sequence
Structure
        10           20        30        40        50      
GCGAGCGCCCAAGUCAG---|   U    U        U     GU         UUA 
                    GUAC CGAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUG GCUU CCUCUAAC GGUAC  UAUGAGUAG   U
GCAAAGGGUUCUUCUUAAAU^   -    U        C     AU         UAU 
  110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P28_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUUGUCCAUGGUGUGUUCAUU -22
Get sequence
Mature sequence

Cja-Mir-154-P28_3p (predicted)
mirBase accessionNone
Sequence 
32- UGAGUAUUACAUGGCCAAUCUC -54
Get sequence