MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P9

Family name MIR-154 (all species)
Seed GAAACAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P32  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P9  Cfa-Mir-154-P9  Cpo-Mir-154-P9  Dno-Mir-154-P9  Eca-Mir-154-P9  Ete-Mir-154-P9  Hsa-Mir-154-P9  Laf-Mir-154-P9  Mml-Mir-154-P9  Mmr-Mir-154-P9  Mmu-Mir-154-P9  Pab-Mir-154-P9  Rno-Mir-154-P9 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131842383-131842438 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAGUGCUAAUCUUGGAUACUCGAAGGAGAGGUUAUCCGUGUUGUCUUCUCUUUAUUUAUGAUGAAACAUACACGGGAAACCUCUUUUUUAGUAUCAAAUCCCACCCUGGGGGCA
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Structure
        10           20        30        40         50        
AUCAGUGCUAAUCUUGG---|    C            A       -   C   -  UUUA 
                    AUACU GAAGGAGAGGUU UCCGUGU UGU UUC UC    \
                    UAUGA UUUUUUCUCCAA GGGCACA ACA AAG AG    U
ACGGGGGUCCCACCCUAAAC^    -            A       U   -   U  UAUU 
    110       100         90        80        70         60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-154-P9_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUUAUCCGUGUUGUCUUCUCU -23
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Mature sequence

Cja-Mir-154-P9_3p
mirBase accessionNone
Sequence 
33- UGAAACAUACACGGGAAACCUCU -56
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