MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-154-P32

Family name MIR-154 (all species)
Seed GAUCGAC
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-154-P1  Cja-Mir-154-P2  Cja-Mir-154-P3  Cja-Mir-154-P4  Cja-Mir-154-P5  Cja-Mir-154-P6a  Cja-Mir-154-P6b  Cja-Mir-154-P7  Cja-Mir-154-P8a  Cja-Mir-154-P9  Cja-Mir-154-P10  Cja-Mir-154-P11  Cja-Mir-154-P12  Cja-Mir-154-P14  Cja-Mir-154-P16a  Cja-Mir-154-P16b  Cja-Mir-154-P17  Cja-Mir-154-P18  Cja-Mir-154-P19  Cja-Mir-154-P20  Cja-Mir-154-P21  Cja-Mir-154-P22  Cja-Mir-154-P23  Cja-Mir-154-P24  Cja-Mir-154-P25  Cja-Mir-154-P26  Cja-Mir-154-P28  Cja-Mir-154-P29  Cja-Mir-154-P30  Cja-Mir-154-P31  Cja-Mir-154-P33  Cja-Mir-154-P34 
Orthologues Bta-Mir-154-P32  Cfa-Mir-154-P32  Cpo-Mir-154-P32  Dno-Mir-154-P32  Eca-Mir-154-P32  Ete-Mir-154-P32  Hsa-Mir-154-P32  Laf-Mir-154-P32  Mml-Mir-154-P32  Mmr-Mir-154-P32  Mmu-Mir-154-P32  Ocu-Mir-154-P32  Pab-Mir-154-P32  Rno-Mir-154-P32 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021924.1: 131880494-131880549 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCUCAGCGCCUUUCCUGGUACUUGAAGAGAGAUCGACCGUGUUAUAUUCGCUUUGUUGAUUUCGAAUAAUACAUGGUUGAUCUUUUCUCAGUAUCAAAUCUCACCUUGGAGGACC
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Structure
        10           20        30        40        50       
AGCUCAGCGCCUUUCCU---|     U  AG               UA      CUUUG 
                    GGUACU GA  AGAGAUCGACCGUGU  UAUUCG     U
                    CUAUGA CU  UUUCUAGUUGGUACA  AUAAGC     U
CCAGGAGGUUCCACUCUAAA^     -  CU               UA      UUUAG 
    110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-154-P32_5p
mirBase accessionNone
Sequence 
0- AGAUCGACCGUGUUAUAUUCG -21
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Star sequence

Cja-Mir-154-P32_3p* (predicted)
mirBase accessionNone
Sequence 
35- AAUAAUACAUGGUUGAUCUUU -56
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