Mir-154-P18

MirGeneDB ID

Pab-Mir-154-P18

Family name

MIR-154 (all species)

Seed

AUCGUAC

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P21 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P18 Cfa-Mir-154-P18 Cja-Mir-154-P18 Cpo-Mir-154-P18 Dno-Mir-154-P18 Eca-Mir-154-P18 Ete-Mir-154-P18 Hsa-Mir-154-P18 Laf-Mir-154-P18 Mml-Mir-154-P18 Mmr-Mir-154-P18 Mmu-Mir-154-P18 Ocu-Mir-154-P18 Rno-Mir-154-P18

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105478464-105478521 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUUCCGUGCUAACCUUUGGUACUUGGAGAGUGGUUAUCCCUGUCCUGUUCGUUUUGCUCAUGUCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGAGCGCAGACUCUGGAGC

Get precursor sequence

Structure

        10          20        30        40        50        
UUUUCCGUGCUAACCUU--|      UG        UUAU      CCU     UUUUG 
                   UGGUACU  GAGAGUGG    CCCUGU   GUUCG     C
                   ACUAUGA  UUUUCACC    GGGACA   UAAGC     U
CGAGGUCUCAGACGCGAGA^      CU        UACU      UGC     UGUAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P18_5p* (predicted)

mirBase accession

None

Sequence

0- GUGGUUAUCCCUGUCCUGUUCG -22

Get sequence

Mature sequence

Pab-Mir-154-P18_3p

mirBase accession

None

Sequence

36- AAUCGUACAGGGUCAUCCACUU -58

Get sequence