MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P18

Family name MIR-154 (all species)
Seed AUCGUAC
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16a  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P18  Cfa-Mir-154-P18  Cja-Mir-154-P18  Cpo-Mir-154-P18  Dno-Mir-154-P18  Eca-Mir-154-P18  Ete-Mir-154-P18  Hsa-Mir-154-P18  Laf-Mir-154-P18  Mml-Mir-154-P18  Mmr-Mir-154-P18  Mmu-Mir-154-P18  Ocu-Mir-154-P18  Rno-Mir-154-P18 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105478464-105478521 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUCCGUGCUAACCUUUGGUACUUGGAGAGUGGUUAUCCCUGUCCUGUUCGUUUUGCUCAUGUCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGAGCGCAGACUCUGGAGC
Get precursor sequence
Structure
        10          20        30        40        50        
UUUUCCGUGCUAACCUU--|      UG        UUAU      CCU     UUUUG 
                   UGGUACU  GAGAGUGG    CCCUGU   GUUCG     C
                   ACUAUGA  UUUUCACC    GGGACA   UAAGC     U
CGAGGUCUCAGACGCGAGA^      CU        UACU      UGC     UGUAC 
      110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Pab-Mir-154-P18_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUGGUUAUCCCUGUCCUGUUCG -22
Get sequence
Mature sequence

Pab-Mir-154-P18_3p
mirBase accessionNone
Sequence 
36- AAUCGUACAGGGUCAUCCACUU -58
Get sequence