MirGeneDB 3.0
MirGeneDB ID

Mmr-Mir-154-P18

Family name MIR-154 (all species)
Seed AUCGUAC
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues Mmr-Mir-154-P1  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmr-Mir-154-P3-v1  Mmr-Mir-154-P3-v2  Mmr-Mir-154-P5  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmr-Mir-154-P6b  Mmr-Mir-154-P6c  Mmr-Mir-154-P7  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmr-Mir-154-P9  Mmr-Mir-154-P10  Mmr-Mir-154-P11  Mmr-Mir-154-P12  Mmr-Mir-154-P14  Mmr-Mir-154-P16  Mmr-Mir-154-P17  Mmr-Mir-154-P20  Mmr-Mir-154-P21  Mmr-Mir-154-P22  Mmr-Mir-154-P23  Mmr-Mir-154-P24  Mmr-Mir-154-P25  Mmr-Mir-154-P26  Mmr-Mir-154-P28  Mmr-Mir-154-P29  Mmr-Mir-154-P30  Mmr-Mir-154-P31  Mmr-Mir-154-P32  Mmr-Mir-154-P33  Mmr-Mir-154-P34  Mmr-Mir-154-P37 
Orthologues Bta-Mir-154-P18  Cfa-Mir-154-P18  Cja-Mir-154-P18  Cpo-Mir-154-P18  Dno-Mir-154-P18  Eca-Mir-154-P18  Ete-Mir-154-P18  Hsa-Mir-154-P18  Laf-Mir-154-P18  Mml-Mir-154-P18  Mmu-Mir-154-P18  Ocu-Mir-154-P18  Pab-Mir-154-P18  Rno-Mir-154-P18 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)		 CM007663.1: 12740364-12740421 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P18)		 Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUCCGUGCUAACCUUUGGUACUUGGAGAGUGGUUAUCCCUGUCCUGUUCGUUUUACUCAUGUCGAAUCGUACAGGGUCAUCCACUUUUUCAGUAUCAAGAACGCAGACUCUGGAGC
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Structure
        10          20        30        40        50        
CUUUCCGUGCUAACCUU--|      UG        UUAU      CCU     UUUUA 
                   UGGUACU  GAGAGUGG    CCCUGU   GUUCG     C
                   ACUAUGA  UUUUCACC    GGGACA   UAAGC     U
CGAGGUCUCAGACGCAAGA^      CU        UACU      UGC     UGUAC 
      110       100        90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Mu Mu Mu Mu Mu Mu Mu Mu
Star sequence

Mmr-Mir-154-P18_5p*
mirBase accessionNone
Sequence 
0- GUGGUUAUCCCUGUCCUGUUCG -22
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Mature sequence

Mmr-Mir-154-P18_3p
mirBase accessionNone
Sequence 
36- AAUCGUACAGGGUCAUCCACUU -58
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