MirGeneDB 3.0

MirGeneDB ID

Mmr-Mir-154-P24

Family name MIR-154 (all species)
Seed AAGUUGU
Species Gray mouse lemur (Microcebus murinus)
MiRBase ID
Paralogues Mmr-Mir-154-P1  Mmr-Mir-154-P2-v1  Mmr-Mir-154-P2-v2  Mmr-Mir-154-P3-v1  Mmr-Mir-154-P3-v2  Mmr-Mir-154-P5  Mmr-Mir-154-P6a-v1  Mmr-Mir-154-P6a-v2  Mmr-Mir-154-P6b  Mmr-Mir-154-P6c  Mmr-Mir-154-P7  Mmr-Mir-154-P8a  Mmr-Mir-154-P8b  Mmr-Mir-154-P9  Mmr-Mir-154-P10  Mmr-Mir-154-P11  Mmr-Mir-154-P12  Mmr-Mir-154-P14  Mmr-Mir-154-P16  Mmr-Mir-154-P17  Mmr-Mir-154-P18  Mmr-Mir-154-P20  Mmr-Mir-154-P21  Mmr-Mir-154-P22  Mmr-Mir-154-P23  Mmr-Mir-154-P25  Mmr-Mir-154-P26  Mmr-Mir-154-P28  Mmr-Mir-154-P29  Mmr-Mir-154-P30  Mmr-Mir-154-P31  Mmr-Mir-154-P32  Mmr-Mir-154-P33  Mmr-Mir-154-P34  Mmr-Mir-154-P37 
Orthologues Bta-Mir-154-P24  Cfa-Mir-154-P24  Cja-Mir-154-P24  Cpo-Mir-154-P24  Dno-Mir-154-P24  Eca-Mir-154-P24  Ete-Mir-154-P24  Hsa-Mir-154-P24  Laf-Mir-154-P24  Mml-Mir-154-P24  Mmu-Mir-154-P24  Ocu-Mir-154-P24  Pab-Mir-154-P24  Rno-Mir-154-P24 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_000165445.3_Mmur_3.0_genomic)
CM007663.1: 12748064-12748121 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P24)
Mir-154-P2-v2 CM007663.1: 12719569-12719626 [+] UCSC Ensembl
Mir-154-P2-v1 CM007663.1: 12719570-12719625 [+] UCSC Ensembl
Mir-154-P37 CM007663.1: 12721366-12721423 [+] UCSC Ensembl
Mir-154-P17 CM007663.1: 12739835-12739897 [+] UCSC Ensembl
Mir-154-P22 CM007663.1: 12745610-12745663 [+] UCSC Ensembl
Mir-154-P30 CM007663.1: 12759249-12759302 [+] UCSC Ensembl
Mir-154-P33 CM007663.1: 12759838-12759893 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGUCUCUGCUUCUCUGUGGUACUUGAAGAGAAGUUGUUCGUGGUGGAUUCGCUUUACUUAUGACGAAUCAUUCACGGACAACACUUUUUUCAGUACCAAAUGCUACCUCUAAGGACU
Get precursor sequence
Structure
        10          20        30         40        50        
UUGUCUCUGCUUCUCUG--|      U       A-           UG      CUUUA 
                   UGGUACU GAAGAGA  GUUGUUCGUGG  GAUUCG     C
                   ACCAUGA CUUUUUU  CAACAGGCACU  CUAAGC     U
UCAGGAAUCUCCAUCGUAA^      -       CA           UA      AGUAU 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Mi Mi Mi Mi Mi Mi Mi Mi
Mature sequence

Mmr-Mir-154-P24_5p

mirBase accessionNone
Sequence
0- GAAGUUGUUCGUGGUGGAUUCG -22
Get sequence
Star sequence

Mmr-Mir-154-P24_3p*

mirBase accessionNone
Sequence
36- AAUCAUUCACGGACAACACUUU -58
Get sequence