Mir-154-P21

MirGeneDB ID

Pab-Mir-154-P21

Family name

MIR-154 (all species)

Seed

UAAUACA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-154-P1 Pab-Mir-154-P2-v1 Pab-Mir-154-P2-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Pab-Mir-154-P4 Pab-Mir-154-P5 Pab-Mir-154-P6a-v1 Pab-Mir-154-P6a-v2 Pab-Mir-154-P6b Pab-Mir-154-P7 Pab-Mir-154-P8a Pab-Mir-154-P8b Pab-Mir-154-P9 Pab-Mir-154-P10 Pab-Mir-154-P11 Pab-Mir-154-P12 Pab-Mir-154-P14 Pab-Mir-154-P16a Pab-Mir-154-P16b Pab-Mir-154-P17 Pab-Mir-154-P18 Pab-Mir-154-P19 Pab-Mir-154-P20 Pab-Mir-154-P23 Pab-Mir-154-P24 Pab-Mir-154-P25 Pab-Mir-154-P26 Pab-Mir-154-P28 Pab-Mir-154-P29 Pab-Mir-154-P30 Pab-Mir-154-P31 Pab-Mir-154-P32 Pab-Mir-154-P33 Pab-Mir-154-P34

Orthologues

Bta-Mir-154-P21 Cfa-Mir-154-P21 Cja-Mir-154-P21 Cpo-Mir-154-P21 Eca-Mir-154-P21 Ete-Mir-154-P21 Hsa-Mir-154-P21 Laf-Mir-154-P21 Mml-Mir-154-P21 Mmr-Mir-154-P21 Ocu-Mir-154-P21

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054694.2: 105481573-105481632 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGUUUCAGAACUAUUCAAGGAUAUUUGAGGAGAGGUUAUCCGUGUUAUGUUCGCUUCAUUCAUCAUGAAUAAUACAUGGUUAACCUCUUUUUGAAUAUCAGACUCUGCCUCGGAGGGCCG

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Structure

        10          20        30        40        50         
CGUUUCAGAACUAUUCAAG--|     UG           U      UA     GCUUCA 
                     GAUAUU  AGGAGAGGUUA CCGUGU  UGUUC      U
                     CUAUAA  UUUUCUCCAAU GGUACA  AUAAG      U
GCCGGGAGGCUCCGUCUCAGA^     GU           U      UA     UACUAC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Li	Li

Star sequence

Pab-Mir-154-P21_5p*

mirBase accession

None

Sequence

0- AGAGGUUAUCCGUGUUAUGUUC -22

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Mature sequence

Pab-Mir-154-P21_3p

mirBase accession

None

Sequence

38- AUAAUACAUGGUUAACCUCUUU -60

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