MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-154-P16a

Family name MIR-154 (all species)
Seed GAGGAUA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues Pab-Mir-154-P1  Pab-Mir-154-P2-v1  Pab-Mir-154-P2-v2  Pab-Mir-154-P3-v1  Pab-Mir-154-P3-v2  Pab-Mir-154-P4  Pab-Mir-154-P5  Pab-Mir-154-P6a-v1  Pab-Mir-154-P6a-v2  Pab-Mir-154-P6b  Pab-Mir-154-P7  Pab-Mir-154-P8a  Pab-Mir-154-P8b  Pab-Mir-154-P9  Pab-Mir-154-P10  Pab-Mir-154-P11  Pab-Mir-154-P12  Pab-Mir-154-P14  Pab-Mir-154-P16b  Pab-Mir-154-P17  Pab-Mir-154-P18  Pab-Mir-154-P19  Pab-Mir-154-P20  Pab-Mir-154-P21  Pab-Mir-154-P23  Pab-Mir-154-P24  Pab-Mir-154-P25  Pab-Mir-154-P26  Pab-Mir-154-P28  Pab-Mir-154-P29  Pab-Mir-154-P30  Pab-Mir-154-P31  Pab-Mir-154-P32  Pab-Mir-154-P33  Pab-Mir-154-P34 
Orthologues Bta-Mir-154-P16  Cfa-Mir-154-P16  Cja-Mir-154-P16a  Cpo-Mir-154-P16  Eca-Mir-154-P16  Ete-Mir-154-P16  Hsa-Mir-154-P16a  Laf-Mir-154-P16  Mml-Mir-154-P16a  Mmr-Mir-154-P16 
Node of Origin (locus) Simiiformes
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054694.2: 105474982-105475041 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCUUUGAGCUACUCUUUGGUACUUGAAGAGAGGAUACCCUUUGUAUGUUCACUUGAUUAAUGGCGAAUAUACAGGGGGAGACUCUUAUUUGCGUAUCAAACUCUGUCGAGGAAGACGC
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Structure
        10          20         30        40        50         
GCUCUUUGAGCUACUCU--       U    -|    GAUA              ACUUGA 
                   UUGGUAC UGAA GAGAG    CCCUUUGUAUGUUC      U
                   AACUAUG GUUU UUCUC    GGGGGACAUAUAAG      U
CGCAGAAGGAGCUGUCUCA       C    A^    AGA-              CGGUAA 
.       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Li Li
Mature sequence

Pab-Mir-154-P16a_5p
mirBase accessionNone
Sequence 
0- AGAGGAUACCCUUUGUAUGUUC -22
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Co-mature sequence

Pab-Mir-154-P16a_3p
mirBase accessionNone
Sequence 
38- AUAUACAGGGGGAGACUCUUAU -60
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