Mir-154-P29

MirGeneDB ID

Cpo-Mir-154-P29

Family name

MIR-154 (all species)

Seed

GAGGUUG

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-377

Paralogues

Cpo-Mir-154-P1 Cpo-Mir-154-P2-v1 Cpo-Mir-154-P2-v2 Cpo-Mir-154-P3-v1 Cpo-Mir-154-P3-v2 Cpo-Mir-154-P4 Cpo-Mir-154-P5 Cpo-Mir-154-P6a-v1 Cpo-Mir-154-P6a-v2 Cpo-Mir-154-P6c Cpo-Mir-154-P7 Cpo-Mir-154-P8-o1 Cpo-Mir-154-P9 Cpo-Mir-154-P10 Cpo-Mir-154-P11 Cpo-Mir-154-P12 Cpo-Mir-154-P14 Cpo-Mir-154-P16 Cpo-Mir-154-P17 Cpo-Mir-154-P18 Cpo-Mir-154-P19 Cpo-Mir-154-P20 Cpo-Mir-154-P21 Cpo-Mir-154-P22 Cpo-Mir-154-P23 Cpo-Mir-154-P24 Cpo-Mir-154-P26 Cpo-Mir-154-P28-v1 Cpo-Mir-154-P28-v2 Cpo-Mir-154-P30 Cpo-Mir-154-P31 Cpo-Mir-154-P32 Cpo-Mir-154-P33 Cpo-Mir-154-P34

Orthologues

Bta-Mir-154-P29 Cfa-Mir-154-P29 Cja-Mir-154-P29 Dno-Mir-154-P29 Eca-Mir-154-P29 Ete-Mir-154-P29 Hsa-Mir-154-P29 Laf-Mir-154-P29 Mml-Mir-154-P29 Mmr-Mir-154-P29 Mmu-Mir-154-P29 Ocu-Mir-154-P29 Pab-Mir-154-P29 Rno-Mir-154-P29

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(cavPor3)

scaffold_111: 1114436-1114495 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-154-P29)

Mir-154-P1 scaffold_111: 1082082-1082140 [+] UCSC
Mir-154-P2-v2 scaffold_111: 1083270-1083327 [+] UCSC
Mir-154-P2-v1 scaffold_111: 1083271-1083326 [+] UCSC
Mir-154-P3-v1 scaffold_111: 1083727-1083781 [+] UCSC
Mir-154-P3-v2 scaffold_111: 1083728-1083780 [+] UCSC
Mir-154-P4 scaffold_111: 1084914-1084970 [+] UCSC
Mir-154-P5 scaffold_111: 1085473-1085528 [+] UCSC
Mir-154-P6a-v1 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P6a-v2 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P7 scaffold_111: 1085914-1085971 [+] UCSC
Mir-154-P8-o1 scaffold_111: 1086616-1086675 [+] UCSC
Mir-154-P9 scaffold_111: 1088359-1088414 [+] UCSC
Mir-154-P10 scaffold_111: 1088693-1088749 [+] UCSC
Mir-154-P11 scaffold_111: 1090490-1090547 [+] UCSC
Mir-154-P12 scaffold_111: 1091798-1091855 [+] UCSC
Mir-376-P2 scaffold_111: 1095062-1095119 [+] UCSC
Mir-154-P14 scaffold_111: 1095544-1095600 [+] UCSC
Mir-376-P4 scaffold_111: 1095759-1095816 [+] UCSC
Mir-376-P5 scaffold_111: 1096085-1096142 [+] UCSC
Mir-154-P16 scaffold_111: 1097764-1097823 [+] UCSC
Mir-154-P17 scaffold_111: 1099199-1099261 [+] UCSC
Mir-154-P18 scaffold_111: 1099737-1099794 [+] UCSC
Mir-154-P19 scaffold_111: 1100599-1100662 [+] UCSC
Mir-154-P20 scaffold_111: 1101145-1101203 [+] UCSC
Mir-154-P21 scaffold_111: 1102750-1102809 [+] UCSC
Mir-154-P22 scaffold_111: 1104334-1104387 [+] UCSC
Mir-154-P23 scaffold_111: 1104622-1104679 [+] UCSC
Mir-154-P24 scaffold_111: 1107038-1107095 [+] UCSC
Mir-134 scaffold_111: 1107399-1107459 [+] UCSC
Mir-154-P26 scaffold_111: 1112305-1112362 [+] UCSC
Mir-154-P28-v2 scaffold_111: 1113039-1113094 [+] UCSC
Mir-154-P28-v1 scaffold_111: 1113040-1113093 [+] UCSC
Mir-154-P29 scaffold_111: 1114436-1114495 [+] UCSC
Mir-541 scaffold_111: 1116256-1116321 [+] UCSC
Mir-154-P31 scaffold_111: 1117221-1117276 [+] UCSC
Mir-154-P32 scaffold_111: 1117336-1117391 [+] UCSC
Mir-154-P33 scaffold_111: 1117656-1117711 [+] UCSC
Mir-154-P6c scaffold_111: 1118056-1118114 [+] UCSC
Mir-154-P34 scaffold_111: 1118353-1118408 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CUUGCCCGUGCUGAUGUUUGAGCCUUGAGCAGAGGUUGCCCUUGGUGAAUUCGCUUUAUGUAUGUUGAAUCACACAAAGGCAACUUUUGUUUGAGUAUCAAAUCCUGCUUGGGACGACCU

Get precursor sequence

Structure

        10          20        30        40         50         
CUUGCCCGUGCUGAUGU--    GC  UG             C   -|   A   GCUUUA 
                   UUGA  CU  AGCAGAGGUUGCC UUG GUGA UUC      U
                   AACU  GA  UUGUUUUCAACGG AAC CACU AAG      G
UCCAGCAGGGUUCGUCCUA    AU  GU             A   A^   -   UUGUAU 
.       110       100        90        80        70         60