MirGeneDB 3.0

MirGeneDB ID

Cpo-Mir-376-P5

Family name MIR-376 (all species)
Seed UAGAUUC
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-376a
Paralogues Cpo-Mir-376-P2  Cpo-Mir-376-P3  Cpo-Mir-376-P4 
Orthologues Bta-Mir-376-P5  Cfa-Mir-376-P5  Cja-Mir-376-P5  Dno-Mir-376-P5  Eca-Mir-376-P5  Ete-Mir-376-P5  Hsa-Mir-376-P5  Laf-Mir-376-P5  Mml-Mir-376-P5  Mmr-Mir-376-P5  Mmu-Mir-376-P5  Ocu-Mir-376-P5  Pab-Mir-376-P5  Rno-Mir-376-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(cavPor3)
scaffold_111: 1096085-1096142 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-376-P5)
Mir-154-P1 scaffold_111: 1082082-1082140 [+] UCSC
Mir-154-P2-v2 scaffold_111: 1083270-1083327 [+] UCSC
Mir-154-P2-v1 scaffold_111: 1083271-1083326 [+] UCSC
Mir-154-P3-v1 scaffold_111: 1083727-1083781 [+] UCSC
Mir-154-P3-v2 scaffold_111: 1083728-1083780 [+] UCSC
Mir-154-P4 scaffold_111: 1084914-1084970 [+] UCSC
Mir-154-P5 scaffold_111: 1085473-1085528 [+] UCSC
Mir-154-P6a-v1 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P6a-v2 scaffold_111: 1085632-1085687 [+] UCSC
Mir-154-P7 scaffold_111: 1085914-1085971 [+] UCSC
Mir-154-P8-o1 scaffold_111: 1086616-1086675 [+] UCSC
Mir-154-P9 scaffold_111: 1088359-1088414 [+] UCSC
Mir-154-P10 scaffold_111: 1088693-1088749 [+] UCSC
Mir-154-P11 scaffold_111: 1090490-1090547 [+] UCSC
Mir-154-P12 scaffold_111: 1091798-1091855 [+] UCSC
Mir-376-P2 scaffold_111: 1095062-1095119 [+] UCSC
Mir-154-P14 scaffold_111: 1095544-1095600 [+] UCSC
Mir-376-P4 scaffold_111: 1095759-1095816 [+] UCSC
Mir-376-P5 scaffold_111: 1096085-1096142 [+] UCSC
Mir-154-P16 scaffold_111: 1097764-1097823 [+] UCSC
Mir-154-P17 scaffold_111: 1099199-1099261 [+] UCSC
Mir-154-P18 scaffold_111: 1099737-1099794 [+] UCSC
Mir-154-P19 scaffold_111: 1100599-1100662 [+] UCSC
Mir-154-P20 scaffold_111: 1101145-1101203 [+] UCSC
Mir-154-P21 scaffold_111: 1102750-1102809 [+] UCSC
Mir-154-P22 scaffold_111: 1104334-1104387 [+] UCSC
Mir-154-P23 scaffold_111: 1104622-1104679 [+] UCSC
Mir-154-P24 scaffold_111: 1107038-1107095 [+] UCSC
Mir-134 scaffold_111: 1107399-1107459 [+] UCSC
Mir-154-P26 scaffold_111: 1112305-1112362 [+] UCSC
Mir-154-P28-v2 scaffold_111: 1113039-1113094 [+] UCSC
Mir-154-P28-v1 scaffold_111: 1113040-1113093 [+] UCSC
Mir-154-P29 scaffold_111: 1114436-1114495 [+] UCSC
Mir-541 scaffold_111: 1116256-1116321 [+] UCSC
Mir-154-P31 scaffold_111: 1117221-1117276 [+] UCSC
Mir-154-P32 scaffold_111: 1117336-1117391 [+] UCSC
Mir-154-P33 scaffold_111: 1117656-1117711 [+] UCSC
Mir-154-P6c scaffold_111: 1118056-1118114 [+] UCSC
Mir-154-P34 scaffold_111: 1118353-1118408 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGGAUGAAGUCAUUCUUUGGUAUUUAAAAGGUAGAUUCUCCUUCUAUGAGUACAUUAUUUAUGAUUAAUCAUAGAGGAAAAUCCACGUUUUCAGUAUCAAAUGCGGCUUUGGAAACUU
Get precursor sequence
Structure
        10          20        30        40        50         
UGGAUGAAGUCAUUCUU--|      U    G  A    C    U      GUACAUUAU 
                   UGGUAUU AAAA GU GAUU UCCU CUAUGA         \
                   ACUAUGA UUUU CA CUAA AGGA GAUACU         U
UUCAAAGGUUUCGGCGUAA^      C    G  C    A    -      AAUUAGUAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Bl Bl Bl Oo Oo Oo Oo To Wh
Mature sequence

Cpo-Mir-376-P5_5p

mirBase accessionMIMAT0047209
Sequence
0- GUAGAUUCUCCUUCUAUGAGUA -22
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Co-mature sequence

Cpo-Mir-376-P5_3p

mirBase accessionMIMAT0047210
Sequence
37- AUCAUAGAGGAAAAUCCACGU -58
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