MirGeneDB 3.0

MirGeneDB ID

Cja-Mir-376-P5

Family name MIR-376 (all species)
Seed UCAUAGA
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues Cja-Mir-376-P1  Cja-Mir-376-P2  Cja-Mir-376-P3  Cja-Mir-376-P4 
Orthologues Bta-Mir-376-P5  Cfa-Mir-376-P5  Cpo-Mir-376-P5  Dno-Mir-376-P5  Eca-Mir-376-P5  Ete-Mir-376-P5  Hsa-Mir-376-P5  Laf-Mir-376-P5  Mml-Mir-376-P5  Mmr-Mir-376-P5  Mmu-Mir-376-P5  Ocu-Mir-376-P5  Pab-Mir-376-P5  Rno-Mir-376-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)
CM021924.1: 131855098-131855155 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAUGGAAGCCUUCUUUGGUAUUUAAAAGGUAGAUUCUCCUUCUAUGAGUACAUUAUUUAUGAUUAAUCAUAGAGGAAAAUCCACGUUUUCAGUAUCAAAUGCUGCUUUGAAAACCU
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Structure
        10          20        30        40        50         
UGGAUGGAAGCCUUCUU--|      U    G  A    C    U      GUACAUUAU 
                   UGGUAUU AAAA GU GAUU UCCU CUAUGA         \
                   ACUAUGA UUUU CA CUAA AGGA GAUACU         U
UCCAAAAGUUUCGUCGUAA^      C    G  C    A    -      AAUUAGUAU 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cja-Mir-376-P5_5p* (predicted)

mirBase accessionNone
Sequence
0- GUAGAUUCUCCUUCUAUGAGUA -22
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Mature sequence

Cja-Mir-376-P5_3p (predicted)

mirBase accessionNone
Sequence
37- AUCAUAGAGGAAAAUCCACGU -58
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