MirGeneDB ID | Cja-Mir-376-P1 |
---|---|
Family name | MIR-376 (all species) |
Seed | UCAUAGA |
Species | White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID | |
Paralogues | Cja-Mir-376-P2 Cja-Mir-376-P3 Cja-Mir-376-P4 Cja-Mir-376-P5 |
Orthologues | Bta-Mir-376-P1 Cfa-Mir-376-P1 Eca-Mir-376-P1 Hsa-Mir-376-P1 Laf-Mir-376-P1 Mml-Mir-376-P1 Mmr-Mir-376-P1 Pab-Mir-376-P1 |
Node of Origin (locus) | Eutheria |
Node of Origin (family) | Eutheria |
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021924.1: 131853631-131853688 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AGGUGUGCUCCAACUUUUCGCCUCUAAAAGGUGGAUGUUCCUUCUAUGCUUACAGGAUUGAUGGUUAAUCAUAGAGGAAAAUCCGCAUUUUCAGAAUCUAAAGUUGCUUUGAAAACAUGet precursor sequence |
Structure | 10 20 30 40 50 AGGUGUGCUCCAACUUUUCGCC- -| G G U C CAGGAU UCU AAAA GUGGAU UUCCU CUAUG UUA \ AGA UUUU CGCCUA AAGGA GAUAC AAU U UACAAAAGUUUCGUUGAAAUCUA C^ A A - U UGGUAG 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Cja-Mir-376-P1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GUGGAUGUUCCUUCUAUGCUUA -22
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|
Mature sequence | Cja-Mir-376-P1_3p (predicted) |
mirBase accession | None |
Sequence |
37- AUCAUAGAGGAAAAUCCGCAU -58
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|