Mir-376-P1

MirGeneDB ID

Cfa-Mir-376-P1

Family name

MIR-376 (all species)

Seed

UCAUAGA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-376a-3

Paralogues

Cfa-Mir-376-P2 Cfa-Mir-376-P3 Cfa-Mir-376-P4 Cfa-Mir-376-P5

Orthologues

Bta-Mir-376-P1 Cja-Mir-376-P1 Eca-Mir-376-P1 Hsa-Mir-376-P1 Laf-Mir-376-P1 Mml-Mir-376-P1 Mmr-Mir-376-P1 Pab-Mir-376-P1

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr8: 69269753-69269810 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-376-P1)

Mir-154-P1 chr8: 69253808-69253866 [+] UCSC Ensembl
Mir-154-P2-v2 chr8: 69255094-69255151 [+] UCSC Ensembl
Mir-154-P2-v1 chr8: 69255095-69255150 [+] UCSC Ensembl
Mir-154-P3-v1 chr8: 69255553-69255607 [+] UCSC Ensembl
Mir-154-P3-v2 chr8: 69255554-69255606 [+] UCSC Ensembl
Mir-154-P4 chr8: 69256764-69256820 [+] UCSC Ensembl
Mir-154-P6a-v2 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P6a-v1 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P7 chr8: 69257795-69257852 [+] UCSC Ensembl
Mir-154-P8a chr8: 69258540-69258597 [+] UCSC Ensembl
Mir-154-P8b chr8: 69258856-69258913 [+] UCSC Ensembl
Mir-154-P9 chr8: 69261399-69261454 [+] UCSC Ensembl
Mir-154-P11 chr8: 69263406-69263463 [+] UCSC Ensembl
Mir-154-P12 chr8: 69265169-69265226 [+] UCSC Ensembl
Mir-154-P35 chr8: 69267179-69267234 [+] UCSC Ensembl
Mir-376-P1 chr8: 69269753-69269810 [+] UCSC Ensembl
Mir-376-P2 chr8: 69270115-69270172 [+] UCSC Ensembl
Mir-376-P3 chr8: 69270499-69270556 [+] UCSC Ensembl
Mir-376-P4 chr8: 69270881-69270938 [+] UCSC Ensembl
Mir-376-P5 chr8: 69271259-69271316 [+] UCSC Ensembl
Mir-154-P15 chr8: 69271824-69271885 [+] UCSC Ensembl
Mir-154-P16 chr8: 69273238-69273297 [+] UCSC Ensembl
Mir-154-P17 chr8: 69274990-69275052 [+] UCSC Ensembl
Mir-154-P18 chr8: 69275495-69275554 [+] UCSC Ensembl
Mir-154-P19 chr8: 69276318-69276381 [+] UCSC Ensembl
Mir-154-P20 chr8: 69276881-69276939 [+] UCSC Ensembl
Mir-544-P1 chr8: 69277674-69277730 [+] UCSC Ensembl
Mir-154-P23 chr8: 69281090-69281147 [+] UCSC Ensembl
Mir-154-P24 chr8: 69283122-69283179 [+] UCSC Ensembl
Mir-134 chr8: 69283503-69283563 [+] UCSC Ensembl
Mir-154-P25 chr8: 69284239-69284297 [+] UCSC Ensembl
Mir-154-P28 chr8: 69289429-69289482 [+] UCSC Ensembl
Mir-154-P29 chr8: 69290943-69291002 [+] UCSC Ensembl
Mir-154-P30 chr8: 69293782-69293835 [+] UCSC Ensembl
Mir-154-P32 chr8: 69294073-69294128 [+] UCSC Ensembl
Mir-154-P33 chr8: 69294377-69294432 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGGGGCUGUUCAAUUUUUGAUAUUCAGACGGUGGAUGUUCCUUCUAUGUUUACGGGAUUUAUAGUUAAUCAUAGAGGAAAAUCCACGUUUUUGGUAUUUGAAGUUGGUUUUAAAACAC

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Structure

        10          20         30        40        50         
UGGGGCUGUUCAAUUUUU--      C-|    G     G     U     U   CGGGAU 
                    GAUAUU  AGACG UGGAU UUCCU CUAUG UUA      \
                    UUAUGG  UUUGC ACCUA AAGGA GAUAC AAU      U
CACAAAAUUUUGGUUGAAGU      UU^    -     A     -     U   UGAUAU 
      110       100        90         80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-376-P1_5p* (predicted)

mirBase accession

None

Sequence

0- GUGGAUGUUCCUUCUAUGUUUA -22

Get sequence

Mature sequence

Cfa-Mir-376-P1_3p

mirBase accession

MIMAT0006722

Sequence

37- AUCAUAGAGGAAAAUCCACGU -58

Get sequence

Proposed targets

TargetScanVert: cfa-miR-376a
miRDB: MIMAT0006722