Mir-154-P3-v1

MirGeneDB ID

Cfa-Mir-154-P3-v1

Family name

MIR-154 (all species)

Seed

AUGUGGG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-299

Paralogues

Cfa-Mir-154-P1 Cfa-Mir-154-P2-v1 Cfa-Mir-154-P2-v2 Cfa-Mir-154-P3-v2 Cfa-Mir-154-P4 Cfa-Mir-154-P5 Cfa-Mir-154-P6a-v1 Cfa-Mir-154-P6a-v2 Cfa-Mir-154-P6b Cfa-Mir-154-P6c Cfa-Mir-154-P7 Cfa-Mir-154-P8a Cfa-Mir-154-P8b Cfa-Mir-154-P9 Cfa-Mir-154-P10 Cfa-Mir-154-P11 Cfa-Mir-154-P12 Cfa-Mir-154-P13 Cfa-Mir-154-P14 Cfa-Mir-154-P15 Cfa-Mir-154-P16 Cfa-Mir-154-P17 Cfa-Mir-154-P18 Cfa-Mir-154-P19 Cfa-Mir-154-P20 Cfa-Mir-154-P21 Cfa-Mir-154-P22 Cfa-Mir-154-P23 Cfa-Mir-154-P24 Cfa-Mir-154-P25 Cfa-Mir-154-P28 Cfa-Mir-154-P29 Cfa-Mir-154-P30 Cfa-Mir-154-P31 Cfa-Mir-154-P32 Cfa-Mir-154-P33 Cfa-Mir-154-P34 Cfa-Mir-154-P35

Orthologues

Bta-Mir-154-P3-v1 Bta-Mir-154-P3-v2 Cja-Mir-154-P3 Cpo-Mir-154-P3-v1 Cpo-Mir-154-P3-v2 Dno-Mir-154-P3-v1 Dno-Mir-154-P3-v2 Eca-Mir-154-P3-v1 Eca-Mir-154-P3-v2 Ete-Mir-154-P3-v1 Ete-Mir-154-P3-v2 Hsa-Mir-154-P3-v1 Hsa-Mir-154-P3-v2 Laf-Mir-154-P3 Mml-Mir-154-P3-v1 Mml-Mir-154-P3-v2 Mmr-Mir-154-P3-v1 Mmr-Mir-154-P3-v2 Mmu-Mir-154-P3-v1 Mmu-Mir-154-P3-v2 Ocu-Mir-154-P3-v1 Ocu-Mir-154-P3-v2 Pab-Mir-154-P3-v1 Pab-Mir-154-P3-v2 Rno-Mir-154-P3-v1 Rno-Mir-154-P3-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

chr8: 69255553-69255607 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P3-v1)

Mir-154-P1 chr8: 69253808-69253866 [+] UCSC Ensembl
Mir-154-P2-v2 chr8: 69255094-69255151 [+] UCSC Ensembl
Mir-154-P2-v1 chr8: 69255095-69255150 [+] UCSC Ensembl
Mir-154-P3-v1 chr8: 69255553-69255607 [+] UCSC Ensembl
Mir-154-P3-v2 chr8: 69255554-69255606 [+] UCSC Ensembl
Mir-154-P4 chr8: 69256764-69256820 [+] UCSC Ensembl
Mir-154-P6a-v2 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P6a-v1 chr8: 69257494-69257549 [+] UCSC Ensembl
Mir-154-P7 chr8: 69257795-69257852 [+] UCSC Ensembl
Mir-154-P8a chr8: 69258540-69258597 [+] UCSC Ensembl
Mir-154-P8b chr8: 69258856-69258913 [+] UCSC Ensembl
Mir-154-P9 chr8: 69261399-69261454 [+] UCSC Ensembl
Mir-154-P11 chr8: 69263406-69263463 [+] UCSC Ensembl
Mir-154-P12 chr8: 69265169-69265226 [+] UCSC Ensembl
Mir-154-P35 chr8: 69267179-69267234 [+] UCSC Ensembl
Mir-376-P1 chr8: 69269753-69269810 [+] UCSC Ensembl
Mir-376-P2 chr8: 69270115-69270172 [+] UCSC Ensembl
Mir-376-P3 chr8: 69270499-69270556 [+] UCSC Ensembl
Mir-376-P4 chr8: 69270881-69270938 [+] UCSC Ensembl
Mir-376-P5 chr8: 69271259-69271316 [+] UCSC Ensembl
Mir-154-P15 chr8: 69271824-69271885 [+] UCSC Ensembl
Mir-154-P16 chr8: 69273238-69273297 [+] UCSC Ensembl
Mir-154-P17 chr8: 69274990-69275052 [+] UCSC Ensembl
Mir-154-P18 chr8: 69275495-69275554 [+] UCSC Ensembl
Mir-154-P19 chr8: 69276318-69276381 [+] UCSC Ensembl
Mir-154-P20 chr8: 69276881-69276939 [+] UCSC Ensembl
Mir-544-P1 chr8: 69277674-69277730 [+] UCSC Ensembl
Mir-154-P23 chr8: 69281090-69281147 [+] UCSC Ensembl
Mir-154-P24 chr8: 69283122-69283179 [+] UCSC Ensembl
Mir-134 chr8: 69283503-69283563 [+] UCSC Ensembl
Mir-154-P25 chr8: 69284239-69284297 [+] UCSC Ensembl
Mir-154-P28 chr8: 69289429-69289482 [+] UCSC Ensembl
Mir-154-P29 chr8: 69290943-69291002 [+] UCSC Ensembl
Mir-154-P30 chr8: 69293782-69293835 [+] UCSC Ensembl
Mir-154-P32 chr8: 69294073-69294128 [+] UCSC Ensembl
Mir-154-P33 chr8: 69294377-69294432 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUCACUGCCCUCGUGCGGUACUUGAAGAAAUGGUUUACCGUCCCACAUACAUUUUGAGUAUGUAUGUGGGACGGUAAACCGCUUCUUGGUAUCUAGCCCAGCCGUCCAAACCAU

Get precursor sequence

Structure

        10            20        30        40        50       
CAUCACUGCCCUCGUGC----|     UG     A                     UUUU 
                     GGUACU  AAGAA UGGUUUACCGUCCCACAUACA    \
                     CUAUGG  UUCUU GCCAAAUGGCAGGGUGUAUGU    G
UACCAAACCUGCCGACCCGAU^     --     C                     AUGA 
   110       100        90          80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Star sequence

Cfa-Mir-154-P3-v1_5p*

mirBase accession

MIMAT0009885

Sequence

0- AUGGUUUACCGUCCCACAUACA -22

Get sequence

Proposed targets

TargetScanVert: cfa-miR-299
miRDB: MIMAT0009885

Mature sequence

Cfa-Mir-154-P3-v1_3p

mirBase accession

None

Sequence

33- UAUGUGGGACGGUAAACCGCUU -55

Get sequence