Mir-154-P31

MirGeneDB ID

Cfa-Mir-154-P31

Family name

MIR-154 (all species)

Seed

GGUCGAC

Species

Dog (Canis familiaris)

MiRBase ID

Paralogues

Cfa-Mir-154-P1 Cfa-Mir-154-P2-v1 Cfa-Mir-154-P2-v2 Cfa-Mir-154-P3-v1 Cfa-Mir-154-P3-v2 Cfa-Mir-154-P4 Cfa-Mir-154-P5 Cfa-Mir-154-P6a-v1 Cfa-Mir-154-P6a-v2 Cfa-Mir-154-P6b Cfa-Mir-154-P6c Cfa-Mir-154-P7 Cfa-Mir-154-P8a Cfa-Mir-154-P8b Cfa-Mir-154-P9 Cfa-Mir-154-P10 Cfa-Mir-154-P11 Cfa-Mir-154-P12 Cfa-Mir-154-P13 Cfa-Mir-154-P14 Cfa-Mir-154-P15 Cfa-Mir-154-P16 Cfa-Mir-154-P17 Cfa-Mir-154-P18 Cfa-Mir-154-P19 Cfa-Mir-154-P20 Cfa-Mir-154-P21 Cfa-Mir-154-P22 Cfa-Mir-154-P23 Cfa-Mir-154-P24 Cfa-Mir-154-P25 Cfa-Mir-154-P28 Cfa-Mir-154-P29 Cfa-Mir-154-P30 Cfa-Mir-154-P32 Cfa-Mir-154-P33 Cfa-Mir-154-P34 Cfa-Mir-154-P35

Orthologues

Bta-Mir-154-P31 Cja-Mir-154-P31 Cpo-Mir-154-P31 Dno-Mir-154-P31 Eca-Mir-154-P31 Ete-Mir-154-P31 Hsa-Mir-154-P31 Laf-Mir-154-P31 Mml-Mir-154-P31 Mmr-Mir-154-P31 Mmu-Mir-154-P31 Pab-Mir-154-P31 Rno-Mir-154-P31

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(canFam3_add)

WIGL01203464.1: 1357-1411 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGCAGCACCGCUCUGGGGUACAGGACGGAUGGUCGACCAGUUGGAAAGUAAUUGUUUCGAAUGUACUUCACCUGGUCCACUAGCCGUCCGUGUCCACUGCAGCCUGCGGGGCCC

Get precursor sequence

Structure

        10          20         30        40        50        
GAGCAGCACCGCUCUGG--| U   -      A    C      U   AA    AUUGUU 
                   GG ACA GGACGG UGGU GACCAG UGG  AGUA      \
                   CC UGU CCUGCC AUCA CUGGUC ACU  UCAU      U
CCCGGGGCGUCCGACGUCA^ -   G      G    C      C   --    GUAAGC 
   110       100         90        80        70          60

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archives.

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-154-P31_5p

mirBase accession

None

Sequence

0- UGGUCGACCAGUUGGAAAGUAAU -23

Get sequence

Star sequence

Cfa-Mir-154-P31_3p*

mirBase accession

None

Sequence

34- UACUUCACCUGGUCCACUAGC -55

Get sequence