MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-154-P4

Family name MIR-154 (all species)
Seed AUGUAAU
Species Cow (Bos taurus)
MiRBase ID bta-mir-380
Paralogues Bta-Mir-154-P1  Bta-Mir-154-P2-v1  Bta-Mir-154-P2-v2  Bta-Mir-154-P3-v1  Bta-Mir-154-P3-v2  Bta-Mir-154-P5  Bta-Mir-154-P6a-v1  Bta-Mir-154-P6a-v2  Bta-Mir-154-P6b  Bta-Mir-154-P6c  Bta-Mir-154-P7  Bta-Mir-154-P8a  Bta-Mir-154-P8b  Bta-Mir-154-P9  Bta-Mir-154-P10  Bta-Mir-154-P11  Bta-Mir-154-P12  Bta-Mir-154-P14  Bta-Mir-154-P16  Bta-Mir-154-P17  Bta-Mir-154-P18  Bta-Mir-154-P19  Bta-Mir-154-P21  Bta-Mir-154-P22  Bta-Mir-154-P23  Bta-Mir-154-P24  Bta-Mir-154-P25  Bta-Mir-154-P26  Bta-Mir-154-P27  Bta-Mir-154-P28  Bta-Mir-154-P29  Bta-Mir-154-P30  Bta-Mir-154-P31  Bta-Mir-154-P32  Bta-Mir-154-P33  Bta-Mir-154-P34  Bta-Mir-154-P35  Bta-Mir-154-P36 
Orthologues Cfa-Mir-154-P4  Cja-Mir-154-P4  Cpo-Mir-154-P4  Dno-Mir-154-P4  Eca-Mir-154-P4  Ete-Mir-154-P4  Hsa-Mir-154-P4  Laf-Mir-154-P4  Mml-Mir-154-P4  Mmu-Mir-154-P4  Pab-Mir-154-P4  Rno-Mir-154-P4 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037348.1: 65915443-65915499 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P4)		 Mir-154-P1 NC_037348.1: 65912523-65912581 [+] UCSC Ensembl
Mir-154-P2-v2 NC_037348.1: 65913749-65913806 [+] UCSC Ensembl
Mir-154-P2-v1 NC_037348.1: 65913750-65913805 [+] UCSC Ensembl
Mir-154-P3-v1 NC_037348.1: 65914212-65914266 [+] UCSC Ensembl
Mir-154-P3-v2 NC_037348.1: 65914213-65914265 [+] UCSC Ensembl
Mir-154-P4 NC_037348.1: 65915443-65915499 [+] UCSC Ensembl
Mir-154-P36 NC_037348.1: 65915604-65915659 [+] UCSC Ensembl
Mir-154-P5 NC_037348.1: 65915956-65916011 [+] UCSC Ensembl
Mir-154-P6a-v2 NC_037348.1: 65916120-65916175 [+] UCSC Ensembl
Mir-154-P6a-v1 NC_037348.1: 65916120-65916175 [+] UCSC Ensembl
Mir-154-P7 NC_037348.1: 65916418-65916475 [+] UCSC Ensembl
Mir-154-P8a NC_037348.1: 65917157-65917214 [+] UCSC Ensembl
Mir-154-P8b NC_037348.1: 65917467-65917526 [+] UCSC Ensembl
Mir-154-P9 NC_037348.1: 65920329-65920384 [+] UCSC Ensembl
Mir-154-P10 NC_037348.1: 65920673-65920729 [+] UCSC Ensembl
Mir-154-P11 NC_037348.1: 65922476-65922533 [+] UCSC Ensembl
Mir-154-P12 NC_037348.1: 65923887-65923943 [+] UCSC Ensembl
Mir-154-P35 NC_037348.1: 65925899-65925954 [+] UCSC Ensembl
Mir-376-P2 NC_037348.1: 65928963-65929020 [+] UCSC Ensembl
Mir-376-P3 NC_037348.1: 65929334-65929391 [+] UCSC Ensembl
Mir-154-P14 NC_037348.1: 65929490-65929545 [+] UCSC Ensembl
Mir-376-P4 NC_037348.1: 65929716-65929773 [+] UCSC Ensembl
Mir-376-P5 NC_037348.1: 65930080-65930137 [+] UCSC Ensembl
Mir-154-P16 NC_037348.1: 65932020-65932079 [+] UCSC Ensembl
Mir-154-P17 NC_037348.1: 65933715-65933777 [+] UCSC Ensembl
Mir-154-P18 NC_037348.1: 65934207-65934264 [+] UCSC Ensembl
Mir-154-P19 NC_037348.1: 65935015-65935078 [+] UCSC Ensembl
Mir-544 NC_037348.1: 65937023-65937079 [+] UCSC Ensembl
Mir-154-P21 NC_037348.1: 65937984-65938043 [+] UCSC Ensembl
Mir-154-P22 NC_037348.1: 65940135-65940188 [+] UCSC Ensembl
Mir-154-P23 NC_037348.1: 65940523-65940580 [+] UCSC Ensembl
Mir-154-P24 NC_037348.1: 65943535-65943592 [+] UCSC Ensembl
Mir-134 NC_037348.1: 65943909-65943973 [+] UCSC Ensembl
Mir-154-P25 NC_037348.1: 65944610-65944668 [+] UCSC Ensembl
Mir-154-P26 NC_037348.1: 65948700-65948757 [+] UCSC Ensembl
Mir-154-P27 NC_037348.1: 65949014-65949074 [+] UCSC Ensembl
Mir-154-P28 NC_037348.1: 65949538-65949591 [+] UCSC Ensembl
Mir-154-P29 NC_037348.1: 65951143-65951202 [+] UCSC Ensembl
Mir-541 NC_037348.1: 65953000-65953065 [+] UCSC Ensembl
Mir-3957 NC_037348.1: 65953387-65953445 [+] UCSC Ensembl
Mir-154-P30 NC_037348.1: 65953907-65953960 [+] UCSC Ensembl
Mir-154-P31 NC_037348.1: 65954052-65954107 [+] UCSC Ensembl
Mir-154-P32 NC_037348.1: 65954195-65954250 [+] UCSC Ensembl
Mir-154-P33 NC_037348.1: 65954526-65954581 [+] UCSC Ensembl
Mir-154-P6c NC_037348.1: 65955040-65955095 [+] UCSC Ensembl
Mir-154-P34 NC_037348.1: 65955342-65955398 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUCAGCCCUUCCCACGGUACCUGAAAAGAUGGUUGACCAUAGAACAUGCGCUGUCUCUAUGUCGUAUGUAAUGUGGUCCACGUCUUCUCAAUAUCAAAUUCAGUCGCAGAGGGCU
Get precursor sequence
Structure
        10           20        30        40        50        
ACAUCAGCCCUUCCCAC---|   CC   A      GUU       GA       CUGUC 
                    GGUA  UGA AAGAUG   GACCAUA  ACAUGCG     U
                    CUAU  ACU UUCUGC   CUGGUGU  UGUAUGC     C
UCGGGAGACGCUGACUUAAA^   A-   C      AC-       AA       UGUAU 
     110       100         90         80        70        60
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Bta-Mir-154-P4_5p*
mirBase accessionMIMAT0003803
Sequence 
0- AUGGUUGACCAUAGAACAUGCG -22
Get sequence
Proposed targets TargetScanVert: bta-miR-380-5p
Mature sequence

Bta-Mir-154-P4_3p
mirBase accessionMIMAT0003804
Sequence 
36- UAUGUAAUGUGGUCCACGUCU -57
Get sequence
Proposed targets TargetScanVert: bta-miR-380-3p