MirGeneDB 3.0

MirGeneDB ID

Dno-Mir-154-P25

Family name MIR-154 (all species)
Seed GAGGCUG
Species Nine-banded armadillo (Dasypus novemcinctus)
MiRBase ID dno-mir-485
Paralogues Dno-Mir-154-P1  Dno-Mir-154-P2-v1  Dno-Mir-154-P2-v2  Dno-Mir-154-P3-v1  Dno-Mir-154-P3-v2  Dno-Mir-154-P4  Dno-Mir-154-P5  Dno-Mir-154-P6a-v1  Dno-Mir-154-P6a-v2  Dno-Mir-154-P6b  Dno-Mir-154-P7  Dno-Mir-154-P8a  Dno-Mir-154-P8b  Dno-Mir-154-P9  Dno-Mir-154-P10  Dno-Mir-154-P11  Dno-Mir-154-P12  Dno-Mir-154-P13  Dno-Mir-154-P14  Dno-Mir-154-P16c  Dno-Mir-154-P16d  Dno-Mir-154-P17  Dno-Mir-154-P18  Dno-Mir-154-P19  Dno-Mir-154-P20  Dno-Mir-154-P22  Dno-Mir-154-P23  Dno-Mir-154-P24  Dno-Mir-154-P26  Dno-Mir-154-P27  Dno-Mir-154-P28-v1  Dno-Mir-154-P28-v2  Dno-Mir-154-P29  Dno-Mir-154-P30  Dno-Mir-154-P31  Dno-Mir-154-P32  Dno-Mir-154-P33  Dno-Mir-154-P34 
Orthologues Bta-Mir-154-P25  Cfa-Mir-154-P25  Cja-Mir-154-P25  Eca-Mir-154-P25  Hsa-Mir-154-P25  Laf-Mir-154-P25  Mml-Mir-154-P25  Mmr-Mir-154-P25  Mmu-Mir-154-P25  Ocu-Mir-154-P25  Pab-Mir-154-P25  Rno-Mir-154-P25 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(dasNov3)
JH578221: 156384-156442 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-154-P25)
Mir-154-P1 JH578221: 124581-124639 [+] UCSC Ensembl
Mir-154-P2-v2 JH578221: 125808-125865 [+] UCSC Ensembl
Mir-154-P2-v1 JH578221: 125809-125864 [+] UCSC Ensembl
Mir-154-P3-v1 JH578221: 126266-126320 [+] UCSC Ensembl
Mir-154-P3-v2 JH578221: 126267-126319 [+] UCSC Ensembl
Mir-154-P4 JH578221: 127474-127530 [+] UCSC Ensembl
Mir-154-P5 JH578221: 128018-128073 [+] UCSC Ensembl
Mir-154-P6a-v1 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P6a-v2 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P7 JH578221: 128465-128522 [+] UCSC Ensembl
Mir-154-P8b JH578221: 129181-129240 [+] UCSC Ensembl
Mir-154-P8a JH578221: 129500-129559 [+] UCSC Ensembl
Mir-154-P9 JH578221: 131208-131263 [+] UCSC Ensembl
Mir-154-P10 JH578221: 131614-131668 [+] UCSC Ensembl
Mir-154-P11 JH578221: 133458-133515 [+] UCSC Ensembl
Mir-154-P12 JH578221: 135322-135379 [+] UCSC Ensembl
Mir-154-P14 JH578221: 141458-141514 [+] UCSC Ensembl
Mir-376-P4 JH578221: 141684-141741 [+] UCSC Ensembl
Mir-376-P5 JH578221: 142061-142118 [+] UCSC Ensembl
Mir-154-P17 JH578221: 146722-146784 [+] UCSC Ensembl
Mir-154-P18 JH578221: 147235-147292 [+] UCSC Ensembl
Mir-154-P19 JH578221: 147994-148057 [+] UCSC Ensembl
Mir-154-P20 JH578221: 148479-148537 [+] UCSC Ensembl
Mir-154-P22 JH578221: 152174-152227 [+] UCSC Ensembl
Mir-154-P23 JH578221: 152628-152685 [+] UCSC Ensembl
Mir-154-P24 JH578221: 155333-155390 [+] UCSC Ensembl
Mir-134 JH578221: 155647-155706 [+] UCSC Ensembl
Mir-154-P25 JH578221: 156384-156442 [+] UCSC Ensembl
Mir-154-P6b JH578221: 157215-157271 [+] UCSC Ensembl
Mir-154-P26 JH578221: 160400-160457 [+] UCSC Ensembl
Mir-154-P27 JH578221: 160728-160788 [+] UCSC Ensembl
Mir-154-P28-v2 JH578221: 161286-161341 [+] UCSC Ensembl
Mir-154-P28-v1 JH578221: 161287-161340 [+] UCSC Ensembl
Mir-154-P29 JH578221: 162674-162733 [+] UCSC Ensembl
Mir-541 JH578221: 164635-164700 [+] UCSC Ensembl
Mir-154-P31 JH578221: 165559-165614 [+] UCSC Ensembl
Mir-154-P32 JH578221: 165682-165737 [+] UCSC Ensembl
Mir-154-P33 JH578221: 165975-166030 [+] UCSC Ensembl
Mir-154-P34 JH578221: 166555-166610 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUCACCAGAGUUCACGUAUGAUACUUGAAGAGAGGCUGGCCGUGAUGAAUUCGAUUCAUCAAAGCGAGUCAUACACGGCUCUCCUCUCUUUUAGUGUCAUAUUCUGCCUCAGAACGCUU
Get precursor sequence
Structure
        10          20        30        40         50         
CUCACCAGAGUUCACGU--        U         CU       -|   A   GAUUCA 
                   AUGAUACU GAAGAGAGG  GGCCGUG AUGA UUC      \
                   UACUGUGA UUUCUCUCC  UCGGCAC UACU GAG      U
UUCGCAAGACUCCGUCUUA        U         UC       A^   -   CGAAAC 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
CommentThe Dicer cut on the 5p arm is -1 relative to most other mammals.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Dno-Mir-154-P25_5p

mirBase accessionMIMAT0047910
Sequence
0- AGAGGCUGGCCGUGAUGAAUUC -22
Get sequence
Star sequence

Dno-Mir-154-P25_3p*

mirBase accessionMIMAT0047911
Sequence
37- GUCAUACACGGCUCUCCUCUCU -59
Get sequence