Mir-376-P4

MirGeneDB ID

Dno-Mir-376-P4

Family name

MIR-376 (all species)

Seed

UCAUAGA

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-376b

Paralogues

Dno-Mir-376-P2 Dno-Mir-376-P3 Dno-Mir-376-P5

Orthologues

Bta-Mir-376-P4 Cfa-Mir-376-P4 Cja-Mir-376-P4 Cpo-Mir-376-P4 Eca-Mir-376-P4 Hsa-Mir-376-P4 Laf-Mir-376-P4 Mml-Mir-376-P4 Mmr-Mir-376-P4 Mmu-Mir-376-P4 Ocu-Mir-376-P4 Pab-Mir-376-P4 Rno-Mir-376-P4

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(dasNov3)

JH578221: 141684-141741 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-376-P4)

Mir-154-P1 JH578221: 124581-124639 [+] UCSC Ensembl
Mir-154-P2-v2 JH578221: 125808-125865 [+] UCSC Ensembl
Mir-154-P2-v1 JH578221: 125809-125864 [+] UCSC Ensembl
Mir-154-P3-v1 JH578221: 126266-126320 [+] UCSC Ensembl
Mir-154-P3-v2 JH578221: 126267-126319 [+] UCSC Ensembl
Mir-154-P4 JH578221: 127474-127530 [+] UCSC Ensembl
Mir-154-P5 JH578221: 128018-128073 [+] UCSC Ensembl
Mir-154-P6a-v1 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P6a-v2 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P7 JH578221: 128465-128522 [+] UCSC Ensembl
Mir-154-P8b JH578221: 129181-129240 [+] UCSC Ensembl
Mir-154-P8a JH578221: 129500-129559 [+] UCSC Ensembl
Mir-154-P9 JH578221: 131208-131263 [+] UCSC Ensembl
Mir-154-P10 JH578221: 131614-131668 [+] UCSC Ensembl
Mir-154-P11 JH578221: 133458-133515 [+] UCSC Ensembl
Mir-154-P12 JH578221: 135322-135379 [+] UCSC Ensembl
Mir-154-P14 JH578221: 141458-141514 [+] UCSC Ensembl
Mir-376-P4 JH578221: 141684-141741 [+] UCSC Ensembl
Mir-376-P5 JH578221: 142061-142118 [+] UCSC Ensembl
Mir-154-P17 JH578221: 146722-146784 [+] UCSC Ensembl
Mir-154-P18 JH578221: 147235-147292 [+] UCSC Ensembl
Mir-154-P19 JH578221: 147994-148057 [+] UCSC Ensembl
Mir-154-P20 JH578221: 148479-148537 [+] UCSC Ensembl
Mir-154-P22 JH578221: 152174-152227 [+] UCSC Ensembl
Mir-154-P23 JH578221: 152628-152685 [+] UCSC Ensembl
Mir-154-P24 JH578221: 155333-155390 [+] UCSC Ensembl
Mir-134 JH578221: 155647-155706 [+] UCSC Ensembl
Mir-154-P25 JH578221: 156384-156442 [+] UCSC Ensembl
Mir-154-P6b JH578221: 157215-157271 [+] UCSC Ensembl
Mir-154-P26 JH578221: 160400-160457 [+] UCSC Ensembl
Mir-154-P27 JH578221: 160728-160788 [+] UCSC Ensembl
Mir-154-P28-v2 JH578221: 161286-161341 [+] UCSC Ensembl
Mir-154-P28-v1 JH578221: 161287-161340 [+] UCSC Ensembl
Mir-154-P29 JH578221: 162674-162733 [+] UCSC Ensembl
Mir-541 JH578221: 164635-164700 [+] UCSC Ensembl
Mir-154-P31 JH578221: 165559-165614 [+] UCSC Ensembl
Mir-154-P32 JH578221: 165682-165737 [+] UCSC Ensembl
Mir-154-P33 JH578221: 165975-166030 [+] UCSC Ensembl
Mir-154-P34 JH578221: 166555-166610 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGAACUCAGUCCUUCUUUGGUAUUUAAAAGGUGGAUAUUCCUUCUAUGUUUACGUGAUUCAGGAUUAAUCAUAGAGGAAAAUCCAUGUUUUCAGUAUCAAAUGCUGCUUUGGAAGUAU

Get precursor sequence

Structure

        10          20        30        40        50         
AGAACUCAGUCCUUCUU--|      U    G      A     U     U   CGUGAU 
                   UGGUAUU AAAA GUGGAU UUCCU CUAUG UUA      \
                   ACUAUGA UUUU UACCUA AAGGA GAUAC AAU      U
UAUGAAGGUUUCGUCGUAA^      C    G      A     -     U   UAGGAC 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-376-P4_5p*

mirBase accession

MIMAT0047852

Sequence

0- GUGGAUAUUCCUUCUAUGUUUA -22

Get sequence

Mature sequence

Dno-Mir-376-P4_3p

mirBase accession

MIMAT0047853

Sequence

37- AUCAUAGAGGAAAAUCCAUGU -58

Get sequence