Mir-154-P13

MirGeneDB ID

Dno-Mir-154-P13

Family name

MIR-154 (all species)

Seed

AAAAUAU

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

Paralogues

Dno-Mir-154-P1 Dno-Mir-154-P2-v1 Dno-Mir-154-P2-v2 Dno-Mir-154-P3-v1 Dno-Mir-154-P3-v2 Dno-Mir-154-P4 Dno-Mir-154-P5 Dno-Mir-154-P6a-v1 Dno-Mir-154-P6a-v2 Dno-Mir-154-P6b Dno-Mir-154-P7 Dno-Mir-154-P8a Dno-Mir-154-P8b Dno-Mir-154-P9 Dno-Mir-154-P10 Dno-Mir-154-P11 Dno-Mir-154-P12 Dno-Mir-154-P14 Dno-Mir-154-P16c Dno-Mir-154-P16d Dno-Mir-154-P17 Dno-Mir-154-P18 Dno-Mir-154-P19 Dno-Mir-154-P20 Dno-Mir-154-P22 Dno-Mir-154-P23 Dno-Mir-154-P24 Dno-Mir-154-P25 Dno-Mir-154-P26 Dno-Mir-154-P27 Dno-Mir-154-P28-v1 Dno-Mir-154-P28-v2 Dno-Mir-154-P29 Dno-Mir-154-P30 Dno-Mir-154-P31 Dno-Mir-154-P32 Dno-Mir-154-P33 Dno-Mir-154-P34

Orthologues

Cfa-Mir-154-P13

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(dasNov3)

JH578221: 136472-136529 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P13)

Mir-154-P1 JH578221: 124581-124639 [+] UCSC Ensembl
Mir-154-P2-v2 JH578221: 125808-125865 [+] UCSC Ensembl
Mir-154-P2-v1 JH578221: 125809-125864 [+] UCSC Ensembl
Mir-154-P3-v1 JH578221: 126266-126320 [+] UCSC Ensembl
Mir-154-P3-v2 JH578221: 126267-126319 [+] UCSC Ensembl
Mir-154-P4 JH578221: 127474-127530 [+] UCSC Ensembl
Mir-154-P5 JH578221: 128018-128073 [+] UCSC Ensembl
Mir-154-P6a-v1 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P6a-v2 JH578221: 128180-128235 [+] UCSC Ensembl
Mir-154-P7 JH578221: 128465-128522 [+] UCSC Ensembl
Mir-154-P8b JH578221: 129181-129240 [+] UCSC Ensembl
Mir-154-P8a JH578221: 129500-129559 [+] UCSC Ensembl
Mir-154-P9 JH578221: 131208-131263 [+] UCSC Ensembl
Mir-154-P10 JH578221: 131614-131668 [+] UCSC Ensembl
Mir-154-P11 JH578221: 133458-133515 [+] UCSC Ensembl
Mir-154-P12 JH578221: 135322-135379 [+] UCSC Ensembl
Mir-154-P14 JH578221: 141458-141514 [+] UCSC Ensembl
Mir-376-P4 JH578221: 141684-141741 [+] UCSC Ensembl
Mir-376-P5 JH578221: 142061-142118 [+] UCSC Ensembl
Mir-154-P17 JH578221: 146722-146784 [+] UCSC Ensembl
Mir-154-P18 JH578221: 147235-147292 [+] UCSC Ensembl
Mir-154-P19 JH578221: 147994-148057 [+] UCSC Ensembl
Mir-154-P20 JH578221: 148479-148537 [+] UCSC Ensembl
Mir-154-P22 JH578221: 152174-152227 [+] UCSC Ensembl
Mir-154-P23 JH578221: 152628-152685 [+] UCSC Ensembl
Mir-154-P24 JH578221: 155333-155390 [+] UCSC Ensembl
Mir-134 JH578221: 155647-155706 [+] UCSC Ensembl
Mir-154-P25 JH578221: 156384-156442 [+] UCSC Ensembl
Mir-154-P6b JH578221: 157215-157271 [+] UCSC Ensembl
Mir-154-P26 JH578221: 160400-160457 [+] UCSC Ensembl
Mir-154-P27 JH578221: 160728-160788 [+] UCSC Ensembl
Mir-154-P28-v2 JH578221: 161286-161341 [+] UCSC Ensembl
Mir-154-P28-v1 JH578221: 161287-161340 [+] UCSC Ensembl
Mir-154-P29 JH578221: 162674-162733 [+] UCSC Ensembl
Mir-541 JH578221: 164635-164700 [+] UCSC Ensembl
Mir-154-P31 JH578221: 165559-165614 [+] UCSC Ensembl
Mir-154-P32 JH578221: 165682-165737 [+] UCSC Ensembl
Mir-154-P33 JH578221: 165975-166030 [+] UCSC Ensembl
Mir-154-P34 JH578221: 166555-166610 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCCCUUGGUGCUACACAUUGGUACUAGAAAAGAAGUUAUCUGUGUUUCUUCACCUUAUUUAUGAUGGAAAAUAUGGGUGCACUUCUAUUUGAGUAUCAUAUCCCAUCACCAAGGGCUG

Get precursor sequence

Structure

        10          20        30         40        50        
UCCCUUGGUGCUACACAU--       A   A      -|          C    CCUUA 
                    UGGUACU GAA AGAAGU UAUCUGUGUUU UUCA     U
                    ACUAUGA UUU UCUUCA GUGGGUAUAAA AGGU     U
GUCGGGAACCACUACCCUAU       G   A      C^          -    AGUAU 
      110       100        90        80        70         60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-154-P13_5p* (predicted)

mirBase accession

None

Sequence

0- AGAAGUUAUCUGUGUUUCUUCA -22

Get sequence

Mature sequence

Dno-Mir-154-P13_3p (predicted)

mirBase accession

None

Sequence

36- GAAAAUAUGGGUGCACUUCUAU -58

Get sequence