| MirGeneDB ID | Cja-Mir-2114 |
|---|
| Family name |
MIR-2114 (all species) |
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| Seed |
AGUCCCU |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Cfa-Mir-2114
Dno-Mir-2114
Eca-Mir-2114
Hsa-Mir-2114
Laf-Mir-2114
Mml-Mir-2114
Pab-Mir-2114
|
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| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 141973025-141973083 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCAAAGAGAGGCCUCUGCCUCCAUGCUCCUAGUCCCUUCCUUGAAGCGGUCGGAUAAUCACAUGAUGAGCCUCAAGCAAGGGACUUCAAGCUGGUGGCUUCCGGCAGCUAGCUUCCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCAAAGAGAGGCCUCU---| U U CCU C A G- GGAUA
GCC CCA GCU AGUCCCUU CUUGA GC GUC A
CGG GGU CGA UCAGGGAA GAACU CG UAG U
GUCCUUCGAUCGACGGCCUU^ U - ACU C C AG UACAC
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Cja-Mir-2114_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UAGUCCCUUCCUUGAAGCGGUC -22
Get sequence
|
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| Co-mature sequence |
Cja-Mir-2114_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- UGAGCCUCAAGCAAGGGACUUCA -59
Get sequence
|
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