MirGeneDB ID | Eca-Mir-2114 |
Family name |
MIR-2114 (all species) |
Seed |
GCCUCAA |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-2114
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Paralogues |
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Orthologues |
Cfa-Mir-2114
Cja-Mir-2114
Dno-Mir-2114
Hsa-Mir-2114
Laf-Mir-2114
Mml-Mir-2114
Pab-Mir-2114
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Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009179.1: 123270384-123270442 [+]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUCAGGGACAGGCCAUGGCCUCCAUGCUCCUAGUCCCUUCCUUGAAGGGUCGGAUAAGUCACAUGACGAGCCUCAAGCAAGGGACUUUGAGCUGGUGGCUCCCAGCAGCCUCCUGUUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCAGGGACAGGCCAUG---| U U CU C A G GAUAAG
GCC CCA GCUC AGUCCCUU CUUGA GG UCG U
CGG GGU CGAG UCAGGGAA GAACU CC AGC C
CCUUGUCCUCCGACGACCCU^ U - UU C - G AGUACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Star sequence |
Eca-Mir-2114_5p* |
mirBase accession | None |
Sequence |
0- UAGUCCCUUCCUUGAAGGGUCG -22
Get sequence
|
Mature sequence |
Eca-Mir-2114_3p |
mirBase accession | MIMAT0034714 |
Sequence |
38- AGCCUCAAGCAAGGGACUUUG -59
Get sequence
|