MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-3085

Family name MIR-3085 (all species)
Seed CUGGCUG
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-3085  Cfa-Mir-3085  Cpo-Mir-3085  Dno-Mir-3085  Ete-Mir-3085  Hsa-Mir-3085  Laf-Mir-3085  Mml-Mir-3085  Mmr-Mir-3085  Mmu-Mir-3085  Ocu-Mir-3085  Pab-Mir-3085  Rno-Mir-3085 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021926.1: 87342189-87342249 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUACACGGUUGCCAACCCUACUCUGGGAAGGUGCCAUUCGGAGGGCCAGGAGUUUGAUUAUGUGUCACUCUGGCUGCUAUGGCCCCCUCCCAGGGUCUGGGCAUCACACCCAGACCAGU
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Structure
        10         20         30        40        50        60  
AUCUACACGGUUGCCAA-   U-|        A  U     UC  AG      G   UUGAUU 
                  CCC  ACUCUGGGA GG GCCAU  GG  GGCCAG AGU      \
                  GGG  UGGGACCCU CC CGGUA  UC  UCGGUC UCA      A
UGACCAGACCCACACUAC   UC^        C  C     --  G-      -   CUGUGU 
 .       110       100        90          80          70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Cja-Mir-3085_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUGCCAUUCGGAGGGCCAGGAGU -25
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Mature sequence

Cja-Mir-3085_3p (predicted)
mirBase accessionNone
Sequence 
40- UCUGGCUGCUAUGGCCCCCUC -61
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