| MirGeneDB ID | Cja-Mir-3085 |
|---|---|
| Family name | MIR-3085 (all species) |
| Seed | CUGGCUG |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-3085 Cfa-Mir-3085 Cpo-Mir-3085 Dno-Mir-3085 Ete-Mir-3085 Hsa-Mir-3085 Laf-Mir-3085 Mml-Mir-3085 Mmr-Mir-3085 Mmu-Mir-3085 Ocu-Mir-3085 Pab-Mir-3085 Rno-Mir-3085 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 87342189-87342249 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | AUCUACACGGUUGCCAACCCUACUCUGGGAAGGUGCCAUUCGGAGGGCCAGGAGUUUGAUUAUGUGUCACUCUGGCUGCUAUGGCCCCCUCCCAGGGUCUGGGCAUCACACCCAGACCAGUGet precursor sequence |
| Structure | 10 20 30 40 50 60 AUCUACACGGUUGCCAA- U-| A U UC AG G UUGAUU CCC ACUCUGGGA GG GCCAU GG GGCCAG AGU \ GGG UGGGACCCU CC CGGUA UC UCGGUC UCA A UGACCAGACCCACACUAC UC^ C C -- G- - CUGUGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Cja-Mir-3085_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGUGCCAUUCGGAGGGCCAGGAGU -25
Get sequence
|
| Mature sequence | Cja-Mir-3085_3p (predicted) |
| mirBase accession | None |
| Sequence |
40- UCUGGCUGCUAUGGCCCCCUC -61
Get sequence
|
