MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-3085

Family name MIR-3085 (all species)
Seed CUGGCUG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-3085
Paralogues
Orthologues Bta-Mir-3085  Cfa-Mir-3085  Cpo-Mir-3085  Dno-Mir-3085  Ete-Mir-3085  Hsa-Mir-3085  Mml-Mir-3085  Mmu-Mir-3085  Ocu-Mir-3085 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)
chr1: 261524248-261524308 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCCAUCACCAACAGUCCCUACUCUGGGAAGGUGCCAUUCUGAAGGCCAGGAGUCUGAAUAUGAGUCACUCUGGCUGCUAUGGCCCCCUCCCAGGGCUUGGGCAUCACAUCCCGACCAAC
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Structure
        10         20         30        40        50        60  
CCUCCAUCACCAACAGU-   UA-|       A  U     UCUGAA      G   CUGAAU 
                  CCC   CUCUGGGA GG GCCAU      GGCCAG AGU      \
                  GGG   GGGACCCU CC CGGUA      UCGGUC UCA      A
CAACCAGCCCUACACUAC   UUC^       C  C     UCG---      -   CUGAGU 
 .       110       100        90        80            70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Rno-Mir-3085_5p*

mirBase accessionNone
Sequence
0- AGGUGCCAUUCUGAAGGCCAGGAGU -25
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Mature sequence

Rno-Mir-3085_3p

mirBase accessionMIMAT0017805
Sequence
40- UCUGGCUGCUAUGGCCCCCUC -61
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Proposed targets TargetScanVert: rno-miR-3085
miRDB: MIMAT0017805