| MirGeneDB ID | Cja-Mir-556-P1 |
|---|---|
| Family name | MIR-556 (all species) |
| Seed | AUGAGCU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-556-P2 |
| Orthologues | Hsa-Mir-556 Mml-Mir-556 Pab-Mir-556 |
| Node of Origin (locus) | C. jacchus |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021932.1: 15740715-15740774 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUAGGAGUUCAUGAAGAUAGCAGUGGGAAAGAUGAGCUCAUUGUAAUAUGCGCUUCAUUUAUGCAUUUCAUAUUACAAUGAGCUCAUCUUUUUUAUUACUACUUUAAAGAAGGCCUUCUAGet precursor sequence |
| Structure | 10 20 30 40 50 CUAGGAGUUCAUGAAGA--| C CGCUUCAU UAG AGUGGGAAAGAUGAGCUCAUUGUAAUAUG U AUC UUAUUUUUUCUACUCGAGUAACAUUAUAC U AUCUUCCGGAAGAAAUUUC^ A UUUACGUA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Cja-Mir-556-P1_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GAUGAGCUCAUUGUAAUAUGC -21
Get sequence
|
| Co-mature sequence | Cja-Mir-556-P1_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- AUAUUACAAUGAGCUCAUCUU -60
Get sequence
|
