MirGeneDB ID | Cja-Mir-556-P2 |
Family name |
MIR-556 (all species) |
Seed |
AUGAGCU |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-556-P1
|
Orthologues |
Hsa-Mir-556
Mml-Mir-556
Pab-Mir-556
|
Node of Origin (locus) |
C. jacchus
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021932.1: 15740713-15740772 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAGGCCUUCUUUAAAGUAGUAAUAAAAAAGAUGAGCUCAUUGUAAUAUGAAAUGCAUAAAUGAAGCGCAUAUUACAAUGAGCUCAUCUUUCCCACUGCUAUCUUCAUGAACUCCUAGGG
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAGGCCUUCUUUAAAG--| AUAAA AAAUGCAU
UAGUA AAAGAUGAGCUCAUUGUAAUAUG A
AUCGU UUUCUACUCGAGUAACAUUAUAC A
GGGAUCCUCAAGUACUUCU^ CACCC GCGAAGUA
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-556-P2_5p (predicted) |
mirBase accession | None |
Sequence |
0- GAUGAGCUCAUUGUAAUAUGA -21
Get sequence
|
Co-mature sequence |
Cja-Mir-556-P2_3p (predicted) |
mirBase accession | None |
Sequence |
39- AUAUUACAAUGAGCUCAUCUU -60
Get sequence
|