MirGeneDB ID | Pab-Mir-556 |
Family name |
MIR-556 (all species) |
Seed |
AUGAGCU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cja-Mir-556-P1
Cja-Mir-556-P2
Hsa-Mir-556
Mml-Mir-556
|
Node of Origin (locus) |
Simiiformes
|
Node of Origin (family) |
Simiiformes
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 87899358-87899417 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUAGGAGUUCAUGAAGAUAGUGAUAAGAAAGAUGAGCUCAUUGUAAUAUGAGCUUCAUUUAUGCAUUUCAUAUUACAAUUAGCUCAUCUUUUUUAUGACUACCUUCAACAAGGCCUUCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUAGGAGUUCAUGAAGA--| G C GCUUCAU
UAGU AUAAGAAAGAUGAGCU AUUGUAAUAUGA U
AUCA UAUUUUUUCUACUCGA UAACAUUAUACU U
AUCUUCCGGAACAACUUCC^ G U UUACGUA
. 110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Pab-Mir-556_5p (predicted) |
mirBase accession | None |
Sequence |
0- GAUGAGCUCAUUGUAAUAUGA -21
Get sequence
|
Co-mature sequence |
Pab-Mir-556_3p (predicted) |
mirBase accession | None |
Sequence |
39- AUAUUACAAUUAGCUCAUCUU -60
Get sequence
|