| MirGeneDB ID | Pab-Mir-556 |
|---|---|
| Family name | MIR-556 (all species) |
| Seed | AUGAGCU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-556-P1 Cja-Mir-556-P2 Hsa-Mir-556 Mml-Mir-556 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 87899358-87899417 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUAGGAGUUCAUGAAGAUAGUGAUAAGAAAGAUGAGCUCAUUGUAAUAUGAGCUUCAUUUAUGCAUUUCAUAUUACAAUUAGCUCAUCUUUUUUAUGACUACCUUCAACAAGGCCUUCUAGet precursor sequence |
| Structure | 10 20 30 40 50 CUAGGAGUUCAUGAAGA--| G C GCUUCAU UAGU AUAAGAAAGAUGAGCU AUUGUAAUAUGA U AUCA UAUUUUUUCUACUCGA UAACAUUAUACU U AUCUUCCGGAACAACUUCC^ G U UUACGUA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Pab-Mir-556_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GAUGAGCUCAUUGUAAUAUGA -21
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|
| Co-mature sequence | Pab-Mir-556_3p (predicted) |
| mirBase accession | None |
| Sequence |
39- AUAUUACAAUUAGCUCAUCUU -60
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|
