MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-556

Family name MIR-556 (all species)
Seed AUGAGCU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Cja-Mir-556-P1  Cja-Mir-556-P2  Hsa-Mir-556  Mml-Mir-556 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054679.2: 87899358-87899417 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAGGAGUUCAUGAAGAUAGUGAUAAGAAAGAUGAGCUCAUUGUAAUAUGAGCUUCAUUUAUGCAUUUCAUAUUACAAUUAGCUCAUCUUUUUUAUGACUACCUUCAACAAGGCCUUCUA
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Structure
        10          20        30        40        50         
CUAGGAGUUCAUGAAGA--|   G                C            GCUUCAU 
                   UAGU AUAAGAAAGAUGAGCU AUUGUAAUAUGA       U
                   AUCA UAUUUUUUCUACUCGA UAACAUUAUACU       U
AUCUUCCGGAACAACUUCC^   G                U            UUACGUA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-556_5p (predicted)

mirBase accessionNone
Sequence
0- GAUGAGCUCAUUGUAAUAUGA -21
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Co-mature sequence

Pab-Mir-556_3p (predicted)

mirBase accessionNone
Sequence
39- AUAUUACAAUUAGCUCAUCUU -60
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