| MirGeneDB ID | Mml-Mir-556 |
|---|
| Family name |
MIR-556 (all species) |
|---|
| Seed |
AUGAACU |
|---|
| Species |
Rhesus monkey (Macaca mulatta) |
|---|
| MiRBase ID |
mml-mir-556
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cja-Mir-556-P1
Cja-Mir-556-P2
Hsa-Mir-556
Pab-Mir-556
|
|---|
| Node of Origin (locus) |
Simiiformes
|
|---|
| Node of Origin (family) |
Simiiformes
|
|---|
Genome context
(GCA_003339765.3_Mmul_10_traces) |
CM014336.1: 88633797-88633856 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUAGGAGUUCAUGAAGAUAGUAAUGAGAAAGAUGAACUCAUUGUAAUAUGAGCUUCAUUUAUGCAUUUCAUAUUACAAUUAGCUGAUCUUUUUUUUUUUUUUUUUUUUUUUACUACCUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAGGAGUUCAUGAAGAUAGUAAU--| GAA C GCUUCAU
GAGAAAGAU CU AUUGUAAUAUGA U
UUUUUUCUA GA UAACAUUAUACU U
CUUCCAUCAUUUUUUUUUUUUUUUUU^ GUC U UUACGUA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| Comment | This is a potential pseudogene. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Bo |
Br |
Br |
Br |
He |
Ki |
Li |
Lu |
Ly |
Sk |
Sp |
Te |
Th |
| |
|
|
|---|
| Mature sequence |
Mml-Mir-556_5p (predicted) |
| mirBase accession | MIMAT0006424 |
|---|
| Sequence |
0- GAUGAACUCAUUGUAAUAUGA -21
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mml-miR-556-5p
|
|---|
| Co-mature sequence |
Mml-Mir-556_3p (predicted) |
| mirBase accession | MIMAT0006425 |
|---|
| Sequence |
39- AUAUUACAAUUAGCUGAUCUU -60
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mml-miR-556-3p
|
|---|
