| MirGeneDB ID | Cja-Mir-605 |
|---|
| Family name |
MIR-605 (all species) |
|---|
| Seed |
GAAGGUG |
|---|
| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Hsa-Mir-605-v1
Hsa-Mir-605-v2
Mml-Mir-605-v1
Mml-Mir-605-v2
Pab-Mir-605
|
|---|
| Node of Origin (locus) |
Simiiformes
|
|---|
| Node of Origin (family) |
Simiiformes
|
|---|
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 75613422-75613478 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UAACAUUCGUCUGAAGCCCUAGCUUGGUUCUAAAUCCCCUGGUGCAUUCUCCUUGGAAAAAACAGAGAAGGUGCUAUGGGAUUUAGGACCAAAUUAUGGCUACAAAAAGGUUAUAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAACAUUCGUCUGAAGC- -| C C UG A CUUGGA
CC UAG UUGGUUCUAAAUCCC UGG C UUCUC \
GG AUU AACCAGGAUUUAGGG AUC G AAGAG A
GGAUAUUGGAAAAACAUC U^ A U GU G ACAAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
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| Star sequence |
Cja-Mir-605_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- UAAAUCCCCUGGUGCAUUCUCC -22
Get sequence
|
|---|
| Mature sequence |
Cja-Mir-605_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- AGAAGGUGCUAUGGGAUUUAGG -57
Get sequence
|
|---|
