| MirGeneDB ID | Cja-Mir-642 |
|---|---|
| Family name | MIR-642 (all species) |
| Seed | UCUCUCU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-642 Mml-Mir-642 Pab-Mir-642 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021936.1: 38414724-38414780 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUCAAUGAUGAUGGAGGCUGAGUUGGGAGGGUCUCUCUCCAGAUAUGUCUUGGGGGGAGGGAUCAAGACACAUGUCGAGAGGGAUCCUCCCAACUCUGAUAAACUGUUGAGAGUGUAGet precursor sequence |
| Structure | 10 20 30 40 50 UUCAAUGAUGAUGGAGGCU--| CA -- GGGGG GAGUUGGGAGGGUCUCUCUC GAUA UGUCUUG \ CUCAACCCUCCUAGGGAGAG CUGU ACAGAAC A AUGUGAGAGUUGUCAAAUAGU^ -- AC UAGGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Cja-Mir-642_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GUCUCUCUCCAGAUAUGUCUUG -22
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|
| Star sequence | Cja-Mir-642_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- AGACACAUGUCGAGAGGGAUCC -57
Get sequence
|
