| MirGeneDB ID | Pab-Mir-642 |
|---|---|
| Family name | MIR-642 (all species) |
| Seed | UCCCUCU |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Cja-Mir-642 Hsa-Mir-642 Mml-Mir-642 |
| Node of Origin (locus) | Simiiformes |
| Node of Origin (family) | Simiiformes |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054699.2: 51724488-51724544 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CACUCUCCACAGUUUAUCUGAGUUGGGAGGGUCCCUCUCCAAAUGUGUCUUGGGGUGGGGGAUCAAGACACAUUUGGAGAGGGAACCUCCCAGCUCGGCCUCUGCCAUCAUUGAACUGet precursor sequence |
| Structure | 10 20 30 40 50 CACUCUCCACAGUUUAU--| G GGGUG CUGAGUUGGGAGG UCCCUCUCCAAAUGUGUCUUG \ GGCUCGACCCUCC AGGGAGAGGUUUACACAGAAC G UCAAGUUACUACCGUCUCC^ A UAGGG 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Pab-Mir-642_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GUCCCUCUCCAAAUGUGUCUUG -22
Get sequence
|
| Star sequence | Pab-Mir-642_3p* (predicted) |
| mirBase accession | None |
| Sequence |
35- AGACACAUUUGGAGAGGGAACC -57
Get sequence
|
