| MirGeneDB ID | Pab-Mir-642 |
|---|
| Family name |
MIR-642 (all species) |
|---|
| Seed |
UCCCUCU |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cja-Mir-642
Hsa-Mir-642
Mml-Mir-642
|
|---|
| Node of Origin (locus) |
Simiiformes
|
|---|
| Node of Origin (family) |
Simiiformes
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054699.2: 51724488-51724544 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACUCUCCACAGUUUAUCUGAGUUGGGAGGGUCCCUCUCCAAAUGUGUCUUGGGGUGGGGGAUCAAGACACAUUUGGAGAGGGAACCUCCCAGCUCGGCCUCUGCCAUCAUUGAACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACUCUCCACAGUUUAU--| G GGGUG
CUGAGUUGGGAGG UCCCUCUCCAAAUGUGUCUUG \
GGCUCGACCCUCC AGGGAGAGGUUUACACAGAAC G
UCAAGUUACUACCGUCUCC^ A UAGGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pab-Mir-642_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- GUCCCUCUCCAAAUGUGUCUUG -22
Get sequence
|
|---|
| Star sequence |
Pab-Mir-642_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- AGACACAUUUGGAGAGGGAACC -57
Get sequence
|
|---|
