MirGeneDB 3.0
MirGeneDB ID

Mml-Mir-642

Family name MIR-642 (all species)
Seed UCCCUCU
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-642
Paralogues
Orthologues Cja-Mir-642  Hsa-Mir-642  Pab-Mir-642 
Node of Origin (locus) Simiiformes
Node of Origin (family) Simiiformes
Genome context
(GCA_003339765.3_Mmul_10_traces)		 CM014354.1: 45741685-45741741 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-642)		 Mir-330-v1 CM014354.1: 45708832-45708895 [-] UCSC Ensembl
Mir-330-v2 CM014354.1: 45708832-45708895 [-] UCSC Ensembl
Mir-642 CM014354.1: 45741685-45741741 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACUCUCACGGUUUAUCUGAGCUGGGAGGGUCCCUCUCCAAAUGUGUCUUGGGGUGGGGGAUCAAGACACAUUUGGAGAGGGAACCUCCCAACUCGGCCUCAUUGAACUCUCCCAG
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Structure
        10          20        30        40        50        
ACACUCUCACGGUUUAU--|    C       G                     GGGUG 
                   CUGAG UGGGAGG UCCCUCUCCAAAUGUGUCUUG     \
                   GGCUC ACCCUCC AGGGAGAGGUUUACACAGAAC     G
GACCCUCUCAAGUUACUCC^    A       A                     UAGGG 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Mature sequence

Mml-Mir-642_5p (predicted)
mirBase accessionMIMAT0006483
Sequence 
0- GUCCCUCUCCAAAUGUGUCUUG -22
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Proposed targets TargetScanVert: mml-miR-642
Star sequence

Mml-Mir-642_3p* (predicted)
mirBase accessionNone
Sequence 
35- AGACACAUUUGGAGAGGGAACC -57
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