MirGeneDB 2.1
MirGeneDB ID

Hsa-Mir-642

Family name MIR-642 (all species)
Seed UCCCUCU
Species Human (Homo sapiens)
MiRBase ID hsa-mir-642a
Paralogues
Orthologues Mml-Mir-642 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(hg38)		 chr19: 45674943-45674999 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-642)		 Mir-330-v1 chr19: 45639007-45639070 [-] UCSC Ensembl
Mir-330-v2 chr19: 45639007-45639070 [-] UCSC Ensembl
Mir-642 chr19: 45674943-45674999 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUCUCCACAGUUUAUCUGAGUUGGGAGGGUCCCUCUCCAAAUGUGUCUUGGGGUGGGGGAUCAAGACACAUUUGGAGAGGGAACCUCCCAACUCGGCCUCUGCCAUCAUUUAACU
Get precursor sequence
Structure
        10          20        30        40        50        
CACUCUCCACAGUUUAU--|            G                     GGGUG 
                   CUGAGUUGGGAGG UCCCUCUCCAAAUGUGUCUUG     \
                   GGCUCAACCCUCC AGGGAGAGGUUUACACAGAAC     G
UCAAUUUACUACCGUCUCC^            A                     UAGGG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 1- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 2- 3- 3- 3- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 4- 5- 5- 5- 5- 5- 5- 5- 6- 6- 6- 6- 6-
Mature sequence

Hsa-Mir-642_5p
mirBase accessionMIMAT0003312
Sequence 
0- GUCCCUCUCCAAAUGUGUCUUG -22
Get sequence
Proposed targets microrna.org: MIMAT0003312
TargetScanVert: hsa-miR-642a-5p
TargetMiner: hsa-miR-642a-5p
miRDB: MIMAT0003312
Star sequence

Hsa-Mir-642_3p*
mirBase accessionMIMAT0020924
Sequence 
35- AGACACAUUUGGAGAGGGAACC -57
Get sequence
Proposed targets TargetScanVert: hsa-miR-642a-3p
TargetMiner: hsa-miR-642a-3p
miRDB: MIMAT0020924