MirGeneDB ID | Cpi-Mir-737 |
Family name |
MIR-737 (all species) |
Seed |
UUUUUUU |
Species |
Western painted turtle (Chrysemys picta bellii) |
MiRBase ID |
cpi-mir-737
|
Paralogues |
|
Orthologues |
Aca-Mir-737
Ami-Mir-737
Cli-Mir-737
Dre-Mir-737
Gja-Mir-737
Gmo-Mir-737
Lch-Mir-737
Loc-Mir-737
Mal-Mir-737
Mun-Mir-737
Oan-Mir-737
Pbv-Mir-737
Spt-Mir-737
Tni-Mir-737
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (chrPic1) |
JH584476: 630875-630935 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUCGCACUGCGGUGUCACUACUCUGCUGUUAUUUUUUUAGGUUUUGAUUUUUAUUACAUCUUCAUGCGAAAAUCAAAACCUAAAGAAAAUGCUGCAAAGAUAGAUUAUUCUGCUGUUGGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCGCACUGCGGUGUCA- -| C U UA AUUACAU
CUA CU UGC GU UUUUUUUAGGUUUUGAUUUUU \
GAU GA ACG CG AAAGAAAUCCAAAACUAAAAG C
UAGGUUGUCGUCUUAUUA A^ A U UA CGUACUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cpi-Mir-737_5p |
mirBase accession | MIMAT0037908 |
Sequence |
0- AUUUUUUUAGGUUUUGAUUUUU -22
Get sequence
|
Star sequence |
Cpi-Mir-737_3p* |
mirBase accession | None |
Sequence |
39- AAAUCAAAACCUAAAGAAAAUG -61
Get sequence
|