MirGeneDB ID | Mal-Mir-737 |
Family name |
MIR-737 (all species) |
Seed |
UUUUUUU |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Aca-Mir-737
Ami-Mir-737
Cli-Mir-737
Cpi-Mir-737
Dre-Mir-737
Gja-Mir-737
Gmo-Mir-737
Lch-Mir-737
Loc-Mir-737
Mun-Mir-737
Oan-Mir-737
Pbv-Mir-737
Spt-Mir-737
Tni-Mir-737
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884956.1: 145429-145489 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCACCGCCGCCGCAGCUCUGCUGCUCUGUUGUUUUUUUAGGUUUUGAUUUUUUGUAGCAUUGGAUGAGAAAAUCAAAGCCUAAAGAAAAUACAGCGCUGACAGGAGACAAGCCCUUGAGUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCACCGCCGCCGCAGCU- CU-| U UG UGUAGCA
CUG GC CUGU UUUUUUUAGGUUUUGAUUUUU \
GAC CG GACA AAAGAAAUCCGAAACUAAAAG U
UUGAGUUCCCGAACAGAG AGU^ C UA AGUAGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mal-Mir-737_5p |
mirBase accession | None |
Sequence |
0- GUUUUUUUAGGUUUUGAUUUUU -22
Get sequence
|
Star sequence |
Mal-Mir-737_3p* (predicted) |
mirBase accession | None |
Sequence |
39- AAAUCAAAGCCUAAAGAAAAUA -61
Get sequence
|