| MirGeneDB ID | Cpo-Mir-1343 |
|---|
| Family name |
MIR-1343 (all species) |
|---|
| Seed |
UCCUGGG |
|---|
| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-1343
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-1343
Cfa-Mir-1343
Cja-Mir-1343
Dno-Mir-1343
Eca-Mir-1343
Hsa-Mir-1343
Laf-Mir-1343
Ocu-Mir-1343
Pab-Mir-1343
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_92: 3937276-3937335 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
AGGAACAGAACAUGAUGCUGGCACCGGUGCUGGGGAGCGGCCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGUUCCGGGCCCGCCCCACCUCUGCCCUUGACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGAACAGAACAUGAUGCU---| A U U A CC C GCCUCUG
GGC CCGG GC GGGG GCGG CCCCGGG GG \
CCG GGCC UG UCUC CGCC GGGGUCC CC C
ACAGUUCCCGUCUCCACCCCGC^ - U C A C- U CCGGUCU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-1343_5p* |
| mirBase accession | MIMAT0047421 |
|---|
| Sequence |
0- UGGGGAGCGGCCCCCCGGGCGG -22
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-1343_3p |
| mirBase accession | MIMAT0047422 |
|---|
| Sequence |
38- CUCCUGGGGCCCGCACUCUCGU -60
Get sequence
|
|---|
