MirGeneDB 3.0

MirGeneDB ID

Bta-Mir-1343

Family name MIR-1343 (all species)
Seed UCCUGGG
Species Cow (Bos taurus)
MiRBase ID bta-mir-1343
Paralogues
Orthologues Cfa-Mir-1343  Cja-Mir-1343  Cpo-Mir-1343  Dno-Mir-1343  Eca-Mir-1343  Hsa-Mir-1343  Laf-Mir-1343  Ocu-Mir-1343  Pab-Mir-1343 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037342.1: 65460282-65460340 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGCAUGAUGACGAUGCUGGCUUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACCUCGGCUGCUGACC
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Structure
        10           20        30        40        50         
UCAGCAUGAUGACGAUGCU---|   U   U  U    A    C       C   CCUCUG 
                      GGCU CGG GC GGGG GCGG CCCCGGG GGG      \
                      CCGG GCC CG UCUC CGCC GGGGUCC CCC      C
CCAGUCGUCGGCUCCACCUCGC^   -   U  C    A    C       U   CGGUCU 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-1343_5p*

mirBase accessionMIMAT0011839
Sequence
0- UGGGGAGCGGCCCCCGGGCGGG -22
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Proposed targets TargetScanVert: bta-miR-1343-5p
Mature sequence

Bta-Mir-1343_3p

mirBase accessionMIMAT0011840
Sequence
37- CUCCUGGGGCCCGCACUCUCGC -59
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Proposed targets TargetScanVert: bta-miR-1343-3p