| MirGeneDB ID | Laf-Mir-1343 |
|---|---|
| Family name | MIR-1343 (all species) |
| Seed | UCCUGGG |
| Species | African bush elephant (Loxodonta africana) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-1343 Cfa-Mir-1343 Cja-Mir-1343 Cpo-Mir-1343 Dno-Mir-1343 Eca-Mir-1343 Hsa-Mir-1343 Ocu-Mir-1343 Pab-Mir-1343 |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_000001905.1_Loxafr3.0) |
GL010048.1: 14669927-14669985 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | GGAUCAGGACAAUGAUGCUGGCUUCAGUGCUGGGGAGUGGCCCCUGGGCGGGCCACUGCUCUGGCCCAUCCUGGGGCCCACACUCUCGCUCCGGGCUCACUCUUCCUCGGCCACUGACAGet precursor sequence |
| Structure | 10 20 30 40 50 GGAUCAGGACAAUGAUGCU---| CAGU U A - U GC GCCACU GGCUU GC GGGG GUGG CCCC GG GG G UCGGG CG UCUC CACC GGGG CC CC C ACAGUCACCGGCUCCUUCUCAC^ CCU- C A C U UA CGGUCU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Laf-Mir-1343_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UGGGGAGUGGCCCCUGGGCGG -21
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|
| Mature sequence | Laf-Mir-1343_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AUCCUGGGGCCCACACUCUCGC -59
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|
