MirGeneDB ID | Pab-Mir-1343 |
Family name |
MIR-1343 (all species) |
Seed |
UCCUGGG |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Bta-Mir-1343
Cfa-Mir-1343
Cja-Mir-1343
Cpo-Mir-1343
Dno-Mir-1343
Eca-Mir-1343
Hsa-Mir-1343
Laf-Mir-1343
Ocu-Mir-1343
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 32281135-32281193 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGAACAGGACGAUGAUGCUGGCGUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACUUCUGCCACUGACA
Get precursor sequence
|
Structure | 10 20 30 40 50
GGAACAGGACGAUGAUGCU---| G U U A C C CCUCUG
GGC UCGG GC GGGG GCGG CCCCGGG GGG \
CCG GGCC CG UCUC CGCC GGGGUCC CCC C
ACAGUCACCGUCUUCACCUCGC^ - U C A C U CGGUCU
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pab-Mir-1343_5p* (predicted) |
mirBase accession | None |
Sequence |
0- UGGGGAGCGGCCCCCGGGCGGG -22
Get sequence
|
Mature sequence |
Pab-Mir-1343_3p (predicted) |
mirBase accession | None |
Sequence |
37- CUCCUGGGGCCCGCACUCUCGC -59
Get sequence
|