MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-1343

Family name MIR-1343 (all species)
Seed UCCUGGG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1343  Cfa-Mir-1343  Cja-Mir-1343  Cpo-Mir-1343  Dno-Mir-1343  Eca-Mir-1343  Hsa-Mir-1343  Laf-Mir-1343  Ocu-Mir-1343 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054688.2: 32281135-32281193 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAACAGGACGAUGAUGCUGGCGUCGGUGCUGGGGAGCGGCCCCCGGGCGGGCCUCUGCUCUGGCCCCUCCUGGGGCCCGCACUCUCGCUCCGGGCCCGCUCCACUUCUGCCACUGACA
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Structure
        10           20        30        40        50         
GGAACAGGACGAUGAUGCU---|  G    U  U    A    C       C   CCUCUG 
                      GGC UCGG GC GGGG GCGG CCCCGGG GGG      \
                      CCG GGCC CG UCUC CGCC GGGGUCC CCC      C
ACAGUCACCGUCUUCACCUCGC^  -    U  C    A    C       U   CGGUCU 
       110       100         90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-1343_5p* (predicted)

mirBase accessionNone
Sequence
0- UGGGGAGCGGCCCCCGGGCGGG -22
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Mature sequence

Pab-Mir-1343_3p (predicted)

mirBase accessionNone
Sequence
37- CUCCUGGGGCCCGCACUCUCGC -59
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